Protein Family : PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED 123837656

Method ID:  5264 Method Name:  Brassicales-Malvales
Sequence Alignment:  View MSA Member Count:  4

4 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Thecc1EG045794 (1 of 3) PF13961//PF14227 - Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2_2) T. cacao v1.1 1940   scaffold_12: 34816-36755
Thecc1EG012799 (1 of 1) PF00665//PF13976//PF14227 - Integrase core domain (rve) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) T. cacao v1.1 2239   scaffold_3: 6140791-6143029
Thecc1EG038934 (1 of 49) PF14227 - gag-polypeptide of LTR copia-type (UBN2_2) T. cacao v1.1 1642   scaffold_9: 14124341-14125982
Cagra.0159s0004 (1 of 1) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON C. grandiflora v1.1 794   Scaffold159: 48624-49417

4 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Thecc1EG012799t1 T. cacao v1.1 123837656 PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED 3 5264 Brassicales-Malvales
Thecc1EG038934t1 T. cacao v1.1 123837656 PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED 3 5264 Brassicales-Malvales
Thecc1EG045794t1 T. cacao v1.1 123837656 PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED 3 5264 Brassicales-Malvales
Cagra.0159s0004.1.p C. grandiflora v1.1 123837656 PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED 1 5264 Brassicales-Malvales