Gene : Thecc1EG012799 T. cacao v1.1
Defline:  (1 of 1) PF00665//PF13976//PF14227 - Integrase core domain (rve) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  555
Name:  ? Thecc1EG012799 Secondary Identifier:  ? PAC:27448786
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012799 0.5kb upstream 0.5kb upstream 2739 true scaffold_3: 6140791-6143529 Theobroma cacao
Thecc1EG012799 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6143030-6143529 Theobroma cacao
Thecc1EG012799 0.5kb downstream 0.5kb downstream 2739 true scaffold_3: 6140291-6143029 Theobroma cacao
Thecc1EG012799 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6140291-6140790 Theobroma cacao
Thecc1EG012799 1.0kb upstream 1.0kb upstream 3239 true scaffold_3: 6140791-6144029 Theobroma cacao
Thecc1EG012799 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6143030-6144029 Theobroma cacao
Thecc1EG012799 1.0kb downstream 1.0kb downstream 3239 true scaffold_3: 6139791-6143029 Theobroma cacao
Thecc1EG012799 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6139791-6140790 Theobroma cacao
Thecc1EG012799 2.0kb upstream 2.0kb upstream 4239 true scaffold_3: 6140791-6145029 Theobroma cacao
Thecc1EG012799 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6143030-6145029 Theobroma cacao
Thecc1EG012799 2.0kb downstream 2.0kb downstream 4239 true scaffold_3: 6138791-6143029 Theobroma cacao
Thecc1EG012799 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6138791-6140790 Theobroma cacao
Thecc1EG012799 5.0kb upstream 5.0kb upstream 7239 true scaffold_3: 6140791-6148029 Theobroma cacao
Thecc1EG012799 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6143030-6148029 Theobroma cacao
Thecc1EG012799 5.0kb downstream 5.0kb downstream 7239 true scaffold_3: 6135791-6143029 Theobroma cacao
Thecc1EG012799 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6135791-6140790 Theobroma cacao
Thecc1EG012799 10.0kb upstream 10.0kb upstream 12239 true scaffold_3: 6140791-6153029 Theobroma cacao
Thecc1EG012799 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6143030-6153029 Theobroma cacao
Thecc1EG012799 10.0kb downstream 10.0kb downstream 12239 true scaffold_3: 6130791-6143029 Theobroma cacao
Thecc1EG012799 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6130791-6140790 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837656 5264 Brassicales-Malvales View MSA
124348287 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain