Gene : Cagra.0159s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  4
Name:  ? Cagra.0159s0004 Secondary Identifier:  ? PAC:28904213
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0159s0004 0.5kb upstream 0.5kb upstream 1294 true Scaffold159: 48124-49417 Capsella grandiflora
Cagra.0159s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold159: 48124-48623 Capsella grandiflora
Cagra.0159s0004 0.5kb downstream 0.5kb downstream 1294 true Scaffold159: 48624-49917 Capsella grandiflora
Cagra.0159s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold159: 49418-49917 Capsella grandiflora
Cagra.0159s0004 1.0kb upstream 1.0kb upstream 1794 true Scaffold159: 47624-49417 Capsella grandiflora
Cagra.0159s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold159: 47624-48623 Capsella grandiflora
Cagra.0159s0004 1.0kb downstream 1.0kb downstream 1794 true Scaffold159: 48624-50417 Capsella grandiflora
Cagra.0159s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold159: 49418-50417 Capsella grandiflora
Cagra.0159s0004 2.0kb upstream 2.0kb upstream 2794 true Scaffold159: 46624-49417 Capsella grandiflora
Cagra.0159s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold159: 46624-48623 Capsella grandiflora
Cagra.0159s0004 2.0kb downstream 2.0kb downstream 2794 true Scaffold159: 48624-51417 Capsella grandiflora
Cagra.0159s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold159: 49418-51417 Capsella grandiflora
Cagra.0159s0004 5.0kb upstream 5.0kb upstream 5794 true Scaffold159: 43624-49417 Capsella grandiflora
Cagra.0159s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold159: 43624-48623 Capsella grandiflora
Cagra.0159s0004 5.0kb downstream 5.0kb downstream 5794 true Scaffold159: 48624-54417 Capsella grandiflora
Cagra.0159s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold159: 49418-54417 Capsella grandiflora
Cagra.0159s0004 10.0kb upstream 10.0kb upstream 10794 true Scaffold159: 38624-49417 Capsella grandiflora
Cagra.0159s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold159: 38624-48623 Capsella grandiflora
Cagra.0159s0004 10.0kb downstream 10.0kb downstream 10794 true Scaffold159: 48624-59417 Capsella grandiflora
Cagra.0159s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold159: 49418-59417 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332714 5261 Brassicaceae Singleton cluster - no MSA
123837656 5264 Brassicales-Malvales View MSA
124348287 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain