Protein Family : retrotransposon, putative, centromere-specific 121994609

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  76

76 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Seita.9G236800   S. italica v2.2 1109   scaffold_9: 18197616-18198724
LOC_Os01g29507 (1 of 5) PF03078 - ATHILA ORF-1 family (ATHILA) O. sativa v7.0 5736   Chr1: 16540178-16545913
LOC_Os01g40780 retrotransposon protein, putative, unclassified O. sativa v7.0 1366   Chr1: 23035865-23037230
LOC_Os10g15210 retrotransposon protein, putative, unclassified, expressed O. sativa v7.0 5315   Chr10: 8049166-8054480
LOC_Os10g23860 retrotransposon protein, putative, unclassified, expressed O. sativa v7.0 1393   Chr10: 12237032-12238424
LOC_Os10g03080 retrotransposon protein, putative, unclassified O. sativa v7.0 1500   Chr10: 1292626-1294125
LOC_Os11g11850 retrotransposon protein, putative, unclassified O. sativa v7.0 1166   Chr11: 6574283-6575448
LOC_Os11g08889 (1 of 5) PF03078 - ATHILA ORF-1 family (ATHILA) O. sativa v7.0 1158   Chr11: 4709505-4710662
LOC_Os11g08729 (1 of 5) PF03078 - ATHILA ORF-1 family (ATHILA) O. sativa v7.0 1158   Chr11: 4648350-4649507
LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 1208   Chr11: 12934472-12935679
LOC_Os11g22440 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 2577   Chr11: 12886461-12889037
LOC_Os11g22470 retrotransposon, putative, centromere-specific O. sativa v7.0 1387   Chr11: 12919690-12921076
LOC_Os12g19990 retrotransposon protein, putative, unclassified, expressed O. sativa v7.0 931   Chr12: 11640608-11641538
LOC_Os02g17790 retrotransposon protein, putative, unclassified O. sativa v7.0 1495   Chr2: 10292508-10294002
LOC_Os02g24050 retrotransposon protein, putative, unclassified, expressed O. sativa v7.0 1351   Chr2: 13936874-13938224
LOC_Os02g25350 retrotransposon, putative, centromere-specific O. sativa v7.0 1125   Chr2: 14777159-14778283
LOC_Os02g25160 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 2065   Chr2: 14629186-14631250
LOC_Os02g24880 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 2232   Chr2: 14425709-14427940
LOC_Os07g22110 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 2534   Chr7: 12357115-12359648
LOC_Os07g21970 retrotransposon protein, putative, unclassified, expressed O. sativa v7.0 1315   Chr7: 12290015-12291329
LOC_Os07g15060 retrotransposon, putative, centromere-specific O. sativa v7.0 1392   Chr7: 8629988-8631379
LOC_Os07g25910 retrotransposon protein, putative, unclassified, expressed O. sativa v7.0 1408   Chr7: 14876552-14877959
LOC_Os03g32460 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 2673   Chr3: 18559134-18561806
LOC_Os03g35894 retrotransposon, putative, centromere-specific, expressed O. sativa v7.0 858   Chr3: 19916125-19916982
LOC_Os03g38110 retrotransposon, putative, centromere-specific O. sativa v7.0 928   Chr3: 21157677-21158604
ChrUn.fgenesh.gene.4 hypothetical protein O. sativa v7.0 1491   ChrUn: 9952-11442
LOC_Os04g07440 retrotransposon, putative, centromere-specific O. sativa v7.0 1160   Chr4: 3951007-3952166
LOC_Os04g10080 (1 of 5) PF03078 - ATHILA ORF-1 family (ATHILA) O. sativa v7.0 1251   Chr4: 5444177-5445427
LOC_Os04g13080 (1 of 5) PF03078 - ATHILA ORF-1 family (ATHILA) O. sativa v7.0 4401   Chr4: 7213901-7218301
LOC_Os04g18990 retrotransposon protein, putative, unclassified O. sativa v7.0 1492   Chr4: 10555205-10556696

76 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
PhHAL.8G064800.1.p P. hallii HAL v2.1 121994609 retrotransposon, putative, centromere-specific 1 5273 Angiosperm
ChrUn.fgenesh.mRNA.4 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os10g03080.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os10g23860.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os08g21810.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os08g21500.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os08g26390.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os08g21950.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os04g13080.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os04g18990.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os04g07440.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os04g10080.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os07g22110.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os07g15060.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os07g21970.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os07g25910.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os01g40780.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os03g32460.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os03g35894.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os03g38110.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os02g24050.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os02g17790.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os02g25350.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os02g24880.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os02g25160.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os09g06360.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os09g16490.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os06g27410.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os06g23710.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm
LOC_Os12g19990.1 O. sativa v7.0 121994609 retrotransposon, putative, centromere-specific 41 5273 Angiosperm