Gene : Carub.0007s2317 C. rubella v1.1
Defline:  (1 of 1) PTHR31375//PTHR31375:SF11 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2317
Name:  ? Carub.0007s2317 Secondary Identifier:  ? PAC:39234810
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s2317 0.5kb upstream 0.5kb upstream 2334 true scaffold_7: 8746862-8749195 Capsella rubella
Carub.0007s2317 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 8748696-8749195 Capsella rubella
Carub.0007s2317 0.5kb downstream 0.5kb downstream 2334 true scaffold_7: 8746362-8748695 Capsella rubella
Carub.0007s2317 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 8746362-8746861 Capsella rubella
Carub.0007s2317 1.0kb upstream 1.0kb upstream 2834 true scaffold_7: 8746862-8749695 Capsella rubella
Carub.0007s2317 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 8748696-8749695 Capsella rubella
Carub.0007s2317 1.0kb downstream 1.0kb downstream 2834 true scaffold_7: 8745862-8748695 Capsella rubella
Carub.0007s2317 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 8745862-8746861 Capsella rubella
Carub.0007s2317 2.0kb upstream 2.0kb upstream 3834 true scaffold_7: 8746862-8750695 Capsella rubella
Carub.0007s2317 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 8748696-8750695 Capsella rubella
Carub.0007s2317 2.0kb downstream 2.0kb downstream 3834 true scaffold_7: 8744862-8748695 Capsella rubella
Carub.0007s2317 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 8744862-8746861 Capsella rubella
Carub.0007s2317 5.0kb upstream 5.0kb upstream 6834 true scaffold_7: 8746862-8753695 Capsella rubella
Carub.0007s2317 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 8748696-8753695 Capsella rubella
Carub.0007s2317 5.0kb downstream 5.0kb downstream 6834 true scaffold_7: 8741862-8748695 Capsella rubella
Carub.0007s2317 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 8741862-8746861 Capsella rubella
Carub.0007s2317 10.0kb upstream 10.0kb upstream 11834 true scaffold_7: 8746862-8758695 Capsella rubella
Carub.0007s2317 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 8748696-8758695 Capsella rubella
Carub.0007s2317 10.0kb downstream 10.0kb downstream 11834 true scaffold_7: 8736862-8748695 Capsella rubella
Carub.0007s2317 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 8736862-8746861 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361065 5261 Brassicaceae View MSA
123831116 5264 Brassicales-Malvales View MSA
124321711 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain