Gene : Cagra.3125s0009 C. grandiflora v1.1
Defline:  (1 of 222) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  9
Name:  ? Cagra.3125s0009 Secondary Identifier:  ? PAC:28919492
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3125s0009 0.5kb upstream 0.5kb upstream 2195 true Scaffold3125: 38008-40202 Capsella grandiflora
Cagra.3125s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold3125: 38008-38507 Capsella grandiflora
Cagra.3125s0009 0.5kb downstream 0.5kb downstream 2195 true Scaffold3125: 38508-40702 Capsella grandiflora
Cagra.3125s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold3125: 40203-40702 Capsella grandiflora
Cagra.3125s0009 1.0kb upstream 1.0kb upstream 2695 true Scaffold3125: 37508-40202 Capsella grandiflora
Cagra.3125s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold3125: 37508-38507 Capsella grandiflora
Cagra.3125s0009 1.0kb downstream 1.0kb downstream 2695 true Scaffold3125: 38508-41202 Capsella grandiflora
Cagra.3125s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold3125: 40203-41202 Capsella grandiflora
Cagra.3125s0009 2.0kb upstream 2.0kb upstream 3695 true Scaffold3125: 36508-40202 Capsella grandiflora
Cagra.3125s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold3125: 36508-38507 Capsella grandiflora
Cagra.3125s0009 2.0kb downstream 2.0kb downstream 3695 true Scaffold3125: 38508-42202 Capsella grandiflora
Cagra.3125s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold3125: 40203-42202 Capsella grandiflora
Cagra.3125s0009 5.0kb upstream 5.0kb upstream 6695 true Scaffold3125: 33508-40202 Capsella grandiflora
Cagra.3125s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold3125: 33508-38507 Capsella grandiflora
Cagra.3125s0009 5.0kb downstream 5.0kb downstream 6695 true Scaffold3125: 38508-45202 Capsella grandiflora
Cagra.3125s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold3125: 40203-45202 Capsella grandiflora
Cagra.3125s0009 10.0kb upstream 10.0kb upstream 11695 true Scaffold3125: 28508-40202 Capsella grandiflora
Cagra.3125s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold3125: 28508-38507 Capsella grandiflora
Cagra.3125s0009 10.0kb downstream 10.0kb downstream 11695 true Scaffold3125: 38508-50202 Capsella grandiflora
Cagra.3125s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold3125: 40203-50202 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379985 5261 Brassicaceae View MSA
123841092 5264 Brassicales-Malvales View MSA
124347159 5266 SBM View MSA
124246707 5268 Malvidae View MSA
124069312 5270 Rosid View MSA
123753292 5271 Pentapetalae View MSA
122796166 5272 Eudicot View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain