Gene : Cagra.3166s0047 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10857:SF28 - E3 UBIQUITIN-PROTEIN LIGASE RGLG1-RELATED Genomic Order:  47
Name:  ? Cagra.3166s0047 Secondary Identifier:  ? PAC:28899710
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3166s0047 0.5kb upstream 0.5kb upstream 3693 true Scaffold3166: 153518-157210 Capsella grandiflora
Cagra.3166s0047 0.5kb upstream 0.5kb upstream 500 false Scaffold3166: 156711-157210 Capsella grandiflora
Cagra.3166s0047 0.5kb downstream 0.5kb downstream 3693 true Scaffold3166: 153018-156710 Capsella grandiflora
Cagra.3166s0047 0.5kb downstream 0.5kb downstream 500 false Scaffold3166: 153018-153517 Capsella grandiflora
Cagra.3166s0047 1.0kb upstream 1.0kb upstream 4193 true Scaffold3166: 153518-157710 Capsella grandiflora
Cagra.3166s0047 1.0kb upstream 1.0kb upstream 1000 false Scaffold3166: 156711-157710 Capsella grandiflora
Cagra.3166s0047 1.0kb downstream 1.0kb downstream 4193 true Scaffold3166: 152518-156710 Capsella grandiflora
Cagra.3166s0047 1.0kb downstream 1.0kb downstream 1000 false Scaffold3166: 152518-153517 Capsella grandiflora
Cagra.3166s0047 2.0kb upstream 2.0kb upstream 5193 true Scaffold3166: 153518-158710 Capsella grandiflora
Cagra.3166s0047 2.0kb upstream 2.0kb upstream 2000 false Scaffold3166: 156711-158710 Capsella grandiflora
Cagra.3166s0047 2.0kb downstream 2.0kb downstream 5193 true Scaffold3166: 151518-156710 Capsella grandiflora
Cagra.3166s0047 2.0kb downstream 2.0kb downstream 2000 false Scaffold3166: 151518-153517 Capsella grandiflora
Cagra.3166s0047 5.0kb upstream 5.0kb upstream 8193 true Scaffold3166: 153518-161710 Capsella grandiflora
Cagra.3166s0047 5.0kb upstream 5.0kb upstream 5000 false Scaffold3166: 156711-161710 Capsella grandiflora
Cagra.3166s0047 5.0kb downstream 5.0kb downstream 8193 true Scaffold3166: 148518-156710 Capsella grandiflora
Cagra.3166s0047 5.0kb downstream 5.0kb downstream 5000 false Scaffold3166: 148518-153517 Capsella grandiflora
Cagra.3166s0047 10.0kb upstream 10.0kb upstream 13193 true Scaffold3166: 153518-166710 Capsella grandiflora
Cagra.3166s0047 10.0kb upstream 10.0kb upstream 10000 false Scaffold3166: 156711-166710 Capsella grandiflora
Cagra.3166s0047 10.0kb downstream 10.0kb downstream 13193 true Scaffold3166: 143518-156710 Capsella grandiflora
Cagra.3166s0047 10.0kb downstream 10.0kb downstream 10000 false Scaffold3166: 143518-153517 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372188 5261 Brassicaceae View MSA
123831546 5264 Brassicales-Malvales View MSA
124336916 5266 SBM View MSA
124251703 5268 Malvidae View MSA
124070395 5270 Rosid View MSA
123748343 5271 Pentapetalae View MSA
122786233 5272 Eudicot View MSA
122045047 5273 Angiosperm View MSA
121350791 5274 Embryophyte View MSA
123424237 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain