Gene : Cagra.3514s0003 C. grandiflora v1.1
Defline:  (1 of 8) KOG4207 - Predicted splicing factor, SR protein superfamily Genomic Order:  3
Name:  ? Cagra.3514s0003 Secondary Identifier:  ? PAC:28906005
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3514s0003 0.5kb upstream 0.5kb upstream 3072 true Scaffold3514: 9450-12521 Capsella grandiflora
Cagra.3514s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold3514: 12022-12521 Capsella grandiflora
Cagra.3514s0003 0.5kb downstream 0.5kb downstream 3072 true Scaffold3514: 8950-12021 Capsella grandiflora
Cagra.3514s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold3514: 8950-9449 Capsella grandiflora
Cagra.3514s0003 1.0kb upstream 1.0kb upstream 3572 true Scaffold3514: 9450-13021 Capsella grandiflora
Cagra.3514s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold3514: 12022-13021 Capsella grandiflora
Cagra.3514s0003 1.0kb downstream 1.0kb downstream 3572 true Scaffold3514: 8450-12021 Capsella grandiflora
Cagra.3514s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold3514: 8450-9449 Capsella grandiflora
Cagra.3514s0003 2.0kb upstream 2.0kb upstream 4572 true Scaffold3514: 9450-14021 Capsella grandiflora
Cagra.3514s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold3514: 12022-14021 Capsella grandiflora
Cagra.3514s0003 2.0kb downstream 2.0kb downstream 4572 true Scaffold3514: 7450-12021 Capsella grandiflora
Cagra.3514s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold3514: 7450-9449 Capsella grandiflora
Cagra.3514s0003 5.0kb upstream 5.0kb upstream 7572 true Scaffold3514: 9450-17021 Capsella grandiflora
Cagra.3514s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold3514: 12022-17021 Capsella grandiflora
Cagra.3514s0003 5.0kb downstream 5.0kb downstream 7572 true Scaffold3514: 4450-12021 Capsella grandiflora
Cagra.3514s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold3514: 4450-9449 Capsella grandiflora
Cagra.3514s0003 10.0kb upstream 10.0kb upstream 12572 true Scaffold3514: 9450-22021 Capsella grandiflora
Cagra.3514s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold3514: 12022-22021 Capsella grandiflora
Cagra.3514s0003 10.0kb downstream 10.0kb downstream 12021 true Scaffold3514: 1-12021 Capsella grandiflora
Cagra.3514s0003 10.0kb downstream 10.0kb downstream 9449 false Scaffold3514: 1-9449 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367206 5261 Brassicaceae View MSA
123840479 5264 Brassicales-Malvales View MSA
124322728 5266 SBM View MSA
124242816 5268 Malvidae View MSA
124065859 5270 Rosid View MSA
123753688 5271 Pentapetalae View MSA
122793597 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain