Gene : Cagra.3468s0001 C. grandiflora v1.1
Defline:  (1 of 12) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1
Name:  ? Cagra.3468s0001 Secondary Identifier:  ? PAC:28902521
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3468s0001 0.5kb upstream 0.5kb upstream 962 true Scaffold3468: 616-1577 Capsella grandiflora
Cagra.3468s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3468: 616-1115 Capsella grandiflora
Cagra.3468s0001 0.5kb downstream 0.5kb downstream 962 true Scaffold3468: 1116-2077 Capsella grandiflora
Cagra.3468s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3468: 1578-2077 Capsella grandiflora
Cagra.3468s0001 1.0kb upstream 1.0kb upstream 1462 true Scaffold3468: 116-1577 Capsella grandiflora
Cagra.3468s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3468: 116-1115 Capsella grandiflora
Cagra.3468s0001 1.0kb downstream 1.0kb downstream 1024 true Scaffold3468: 1116-2139 Capsella grandiflora
Cagra.3468s0001 1.0kb downstream 1.0kb downstream 562 false Scaffold3468: 1578-2139 Capsella grandiflora
Cagra.3468s0001 2.0kb upstream 2.0kb upstream 1577 true Scaffold3468: 1-1577 Capsella grandiflora
Cagra.3468s0001 2.0kb upstream 2.0kb upstream 1115 false Scaffold3468: 1-1115 Capsella grandiflora
Cagra.3468s0001 2.0kb downstream 2.0kb downstream 1024 true Scaffold3468: 1116-2139 Capsella grandiflora
Cagra.3468s0001 2.0kb downstream 2.0kb downstream 562 false Scaffold3468: 1578-2139 Capsella grandiflora
Cagra.3468s0001 5.0kb upstream 5.0kb upstream 1577 true Scaffold3468: 1-1577 Capsella grandiflora
Cagra.3468s0001 5.0kb upstream 5.0kb upstream 1115 false Scaffold3468: 1-1115 Capsella grandiflora
Cagra.3468s0001 5.0kb downstream 5.0kb downstream 1024 true Scaffold3468: 1116-2139 Capsella grandiflora
Cagra.3468s0001 5.0kb downstream 5.0kb downstream 562 false Scaffold3468: 1578-2139 Capsella grandiflora
Cagra.3468s0001 10.0kb upstream 10.0kb upstream 1577 true Scaffold3468: 1-1577 Capsella grandiflora
Cagra.3468s0001 10.0kb upstream 10.0kb upstream 1115 false Scaffold3468: 1-1115 Capsella grandiflora
Cagra.3468s0001 10.0kb downstream 10.0kb downstream 1024 true Scaffold3468: 1116-2139 Capsella grandiflora
Cagra.3468s0001 10.0kb downstream 10.0kb downstream 562 false Scaffold3468: 1578-2139 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379614 5261 Brassicaceae View MSA
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain