Gene : Glyma.06G001600 G. max Wm82.a2.v1
Defline:  (1 of 16) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO Genomic Order:  16
Name:  ? Glyma.06G001600 Secondary Identifier:  ? PAC:30551836
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.06G001600 0.5kb upstream 0.5kb upstream 5031 true Chr06: 154027-159057 Glycine max
Glyma.06G001600 0.5kb upstream 0.5kb upstream 500 false Chr06: 154027-154526 Glycine max
Glyma.06G001600 0.5kb downstream 0.5kb downstream 5031 true Chr06: 154527-159557 Glycine max
Glyma.06G001600 0.5kb downstream 0.5kb downstream 500 false Chr06: 159058-159557 Glycine max
Glyma.06G001600 1.0kb upstream 1.0kb upstream 5531 true Chr06: 153527-159057 Glycine max
Glyma.06G001600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 153527-154526 Glycine max
Glyma.06G001600 1.0kb downstream 1.0kb downstream 5531 true Chr06: 154527-160057 Glycine max
Glyma.06G001600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 159058-160057 Glycine max
Glyma.06G001600 2.0kb upstream 2.0kb upstream 6531 true Chr06: 152527-159057 Glycine max
Glyma.06G001600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 152527-154526 Glycine max
Glyma.06G001600 2.0kb downstream 2.0kb downstream 6531 true Chr06: 154527-161057 Glycine max
Glyma.06G001600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 159058-161057 Glycine max
Glyma.06G001600 5.0kb upstream 5.0kb upstream 9531 true Chr06: 149527-159057 Glycine max
Glyma.06G001600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 149527-154526 Glycine max
Glyma.06G001600 5.0kb downstream 5.0kb downstream 9531 true Chr06: 154527-164057 Glycine max
Glyma.06G001600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 159058-164057 Glycine max
Glyma.06G001600 10.0kb upstream 10.0kb upstream 14531 true Chr06: 144527-159057 Glycine max
Glyma.06G001600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 144527-154526 Glycine max
Glyma.06G001600 10.0kb downstream 10.0kb downstream 14531 true Chr06: 154527-169057 Glycine max
Glyma.06G001600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 159058-169057 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310263 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.69821 0.0 26.4627   High
cufflinks 8.93396 0.0 24.5166   High
cufflinks 1.74781 0.0 5.85213   Low
cufflinks 3.32532 0.0 10.1926    
cufflinks 2.84225 0.0 8.93531    
cufflinks 1.95766 0.0 6.49231    
cufflinks 3.19287 0.0 9.90982    
cufflinks 3.3147 0.0 10.1735    
cufflinks 2.29165 0.0 7.43007    
cufflinks 3.328        
cufflinks 0.202       Low
cufflinks 2.315        
cufflinks 1.552        
cufflinks 1.682        
cufflinks 0.235       Low
cufflinks 13.316     High High
cufflinks 0.619        
cufflinks 3.455        
cufflinks 4.946        
cufflinks 15.767     High High
cufflinks 0.321       Low
cufflinks 14.998     High High
cufflinks 14.748     High High
cufflinks 0.224       Low
cufflinks 13.062     High High
cufflinks 0.551        

0 Strain