Gene : Glyma.11G117500 G. max Wm82.a2.v1
Defline:  (1 of 477) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1175
Name:  ? Glyma.11G117500 Secondary Identifier:  ? PAC:30530068
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G117500 0.5kb upstream 0.5kb upstream 1604 true Chr11: 8932743-8934346 Glycine max
Glyma.11G117500 0.5kb upstream 0.5kb upstream 500 false Chr11: 8933847-8934346 Glycine max
Glyma.11G117500 0.5kb downstream 0.5kb downstream 1604 true Chr11: 8932243-8933846 Glycine max
Glyma.11G117500 0.5kb downstream 0.5kb downstream 500 false Chr11: 8932243-8932742 Glycine max
Glyma.11G117500 1.0kb upstream 1.0kb upstream 2104 true Chr11: 8932743-8934846 Glycine max
Glyma.11G117500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 8933847-8934846 Glycine max
Glyma.11G117500 1.0kb downstream 1.0kb downstream 2104 true Chr11: 8931743-8933846 Glycine max
Glyma.11G117500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 8931743-8932742 Glycine max
Glyma.11G117500 2.0kb upstream 2.0kb upstream 3104 true Chr11: 8932743-8935846 Glycine max
Glyma.11G117500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 8933847-8935846 Glycine max
Glyma.11G117500 2.0kb downstream 2.0kb downstream 3104 true Chr11: 8930743-8933846 Glycine max
Glyma.11G117500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 8930743-8932742 Glycine max
Glyma.11G117500 5.0kb upstream 5.0kb upstream 6104 true Chr11: 8932743-8938846 Glycine max
Glyma.11G117500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 8933847-8938846 Glycine max
Glyma.11G117500 5.0kb downstream 5.0kb downstream 6104 true Chr11: 8927743-8933846 Glycine max
Glyma.11G117500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 8927743-8932742 Glycine max
Glyma.11G117500 10.0kb upstream 10.0kb upstream 11104 true Chr11: 8932743-8943846 Glycine max
Glyma.11G117500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 8933847-8943846 Glycine max
Glyma.11G117500 10.0kb downstream 10.0kb downstream 11104 true Chr11: 8922743-8933846 Glycine max
Glyma.11G117500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 8922743-8932742 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246766 5265 Fabidae Singleton cluster - no MSA
124065859 5270 Rosid View MSA
123753688 5271 Pentapetalae View MSA
122793597 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.09112 0.0 4.04114    
cufflinks 2.5989 0.0 9.12178    
cufflinks 5.8928 0.0 18.7404    
cufflinks 5.23294 0.0 16.9298    
cufflinks 1.8511 0.0 6.64001    
cufflinks 5.04163 0.0 16.3681    
cufflinks 10.4666 0.0 30.6465   High
cufflinks 1.10907 0.0 4.10931    
cufflinks 0.338171 0.0 1.32005   Low
cufflinks 1.18        
cufflinks 3.019        
cufflinks 10.717     High High
cufflinks 0.347       Low
cufflinks 0.187       Low
cufflinks 0.169       Low
cufflinks 2.573        
cufflinks 0.409       Low
cufflinks 25.389     High High
cufflinks 2.731        
cufflinks 1.991        
cufflinks 1.266        
cufflinks 2.396        
cufflinks 0.714        
cufflinks 4.695        
cufflinks 2.749        
cufflinks 1.439        

0 Strain