Gene : Glyma.04G002000 G. max Wm82.a2.v1
Defline:  (1 of 16) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO Genomic Order:  20
Name:  ? Glyma.04G002000 Secondary Identifier:  ? PAC:30487299
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G002000 0.5kb upstream 0.5kb upstream 5582 true Chr04: 172348-177929 Glycine max
Glyma.04G002000 0.5kb upstream 0.5kb upstream 500 false Chr04: 172348-172847 Glycine max
Glyma.04G002000 0.5kb downstream 0.5kb downstream 5582 true Chr04: 172848-178429 Glycine max
Glyma.04G002000 0.5kb downstream 0.5kb downstream 500 false Chr04: 177930-178429 Glycine max
Glyma.04G002000 1.0kb upstream 1.0kb upstream 6082 true Chr04: 171848-177929 Glycine max
Glyma.04G002000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 171848-172847 Glycine max
Glyma.04G002000 1.0kb downstream 1.0kb downstream 6082 true Chr04: 172848-178929 Glycine max
Glyma.04G002000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 177930-178929 Glycine max
Glyma.04G002000 2.0kb upstream 2.0kb upstream 7082 true Chr04: 170848-177929 Glycine max
Glyma.04G002000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 170848-172847 Glycine max
Glyma.04G002000 2.0kb downstream 2.0kb downstream 7082 true Chr04: 172848-179929 Glycine max
Glyma.04G002000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 177930-179929 Glycine max
Glyma.04G002000 5.0kb upstream 5.0kb upstream 10082 true Chr04: 167848-177929 Glycine max
Glyma.04G002000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 167848-172847 Glycine max
Glyma.04G002000 5.0kb downstream 5.0kb downstream 10082 true Chr04: 172848-182929 Glycine max
Glyma.04G002000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 177930-182929 Glycine max
Glyma.04G002000 10.0kb upstream 10.0kb upstream 15082 true Chr04: 162848-177929 Glycine max
Glyma.04G002000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 162848-172847 Glycine max
Glyma.04G002000 10.0kb downstream 10.0kb downstream 15082 true Chr04: 172848-187929 Glycine max
Glyma.04G002000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 177930-187929 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310263 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3909 0.0 38.411   High
cufflinks 9.314 0.0 24.9906   High
cufflinks 3.06593 0.0 9.03961    
cufflinks 3.66477 0.0 10.5754    
cufflinks 2.86291 0.0 8.55304    
cufflinks 2.56305 0.0 7.77299    
cufflinks 4.19472 0.0 11.964    
cufflinks 3.69419 0.0 10.643    
cufflinks 2.54966 0.0 7.73519    
cufflinks 2.569        
cufflinks 0.538       Low
cufflinks 2.653        
cufflinks 1.235        
cufflinks 1.145        
cufflinks 0.773        
cufflinks 13.875     High High
cufflinks 0.553       Low
cufflinks 2.978        
cufflinks 4.073        
cufflinks 16.207     High High
cufflinks 0.946        
cufflinks 15.338     High High
cufflinks 13.694     High High
cufflinks 0.927        
cufflinks 13.593     High High
cufflinks 0.629       Low

0 Strain