Gene : Brara.I05559 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR31375:SF17 - EXOPOLYGALACTURONASE CLONE GBGE184 Genomic Order:  5559
Name:  ? Brara.I05559 Secondary Identifier:  ? PAC:30643317
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05559 0.5kb upstream 0.5kb upstream 2129 true A09: 44496798-44498926 Brassica rapa FPsc
Brara.I05559 0.5kb upstream 0.5kb upstream 500 false A09: 44496798-44497297 Brassica rapa FPsc
Brara.I05559 0.5kb downstream 0.5kb downstream 2129 true A09: 44497298-44499426 Brassica rapa FPsc
Brara.I05559 0.5kb downstream 0.5kb downstream 500 false A09: 44498927-44499426 Brassica rapa FPsc
Brara.I05559 1.0kb upstream 1.0kb upstream 2629 true A09: 44496298-44498926 Brassica rapa FPsc
Brara.I05559 1.0kb upstream 1.0kb upstream 1000 false A09: 44496298-44497297 Brassica rapa FPsc
Brara.I05559 1.0kb downstream 1.0kb downstream 2629 true A09: 44497298-44499926 Brassica rapa FPsc
Brara.I05559 1.0kb downstream 1.0kb downstream 1000 false A09: 44498927-44499926 Brassica rapa FPsc
Brara.I05559 2.0kb upstream 2.0kb upstream 3629 true A09: 44495298-44498926 Brassica rapa FPsc
Brara.I05559 2.0kb upstream 2.0kb upstream 2000 false A09: 44495298-44497297 Brassica rapa FPsc
Brara.I05559 2.0kb downstream 2.0kb downstream 3629 true A09: 44497298-44500926 Brassica rapa FPsc
Brara.I05559 2.0kb downstream 2.0kb downstream 2000 false A09: 44498927-44500926 Brassica rapa FPsc
Brara.I05559 5.0kb upstream 5.0kb upstream 6629 true A09: 44492298-44498926 Brassica rapa FPsc
Brara.I05559 5.0kb upstream 5.0kb upstream 5000 false A09: 44492298-44497297 Brassica rapa FPsc
Brara.I05559 5.0kb downstream 5.0kb downstream 6629 true A09: 44497298-44503926 Brassica rapa FPsc
Brara.I05559 5.0kb downstream 5.0kb downstream 5000 false A09: 44498927-44503926 Brassica rapa FPsc
Brara.I05559 10.0kb upstream 10.0kb upstream 11629 true A09: 44487298-44498926 Brassica rapa FPsc
Brara.I05559 10.0kb upstream 10.0kb upstream 10000 false A09: 44487298-44497297 Brassica rapa FPsc
Brara.I05559 10.0kb downstream 10.0kb downstream 11629 true A09: 44497298-44508926 Brassica rapa FPsc
Brara.I05559 10.0kb downstream 10.0kb downstream 10000 false A09: 44498927-44508926 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122353879 5261 Brassicaceae Singleton cluster - no MSA
123842779 5264 Brassicales-Malvales View MSA
124323769 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier