Gene : Brara.K00458 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR31375:SF11 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  43
Name:  ? Brara.K00458 Secondary Identifier:  ? PAC:30606803
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00458 0.5kb upstream 0.5kb upstream 2345 true Scaffold18850: 268574-270918 Brassica rapa FPsc
Brara.K00458 0.5kb upstream 0.5kb upstream 500 false Scaffold18850: 270419-270918 Brassica rapa FPsc
Brara.K00458 0.5kb downstream 0.5kb downstream 2345 true Scaffold18850: 268074-270418 Brassica rapa FPsc
Brara.K00458 0.5kb downstream 0.5kb downstream 500 false Scaffold18850: 268074-268573 Brassica rapa FPsc
Brara.K00458 1.0kb upstream 1.0kb upstream 2845 true Scaffold18850: 268574-271418 Brassica rapa FPsc
Brara.K00458 1.0kb upstream 1.0kb upstream 1000 false Scaffold18850: 270419-271418 Brassica rapa FPsc
Brara.K00458 1.0kb downstream 1.0kb downstream 2845 true Scaffold18850: 267574-270418 Brassica rapa FPsc
Brara.K00458 1.0kb downstream 1.0kb downstream 1000 false Scaffold18850: 267574-268573 Brassica rapa FPsc
Brara.K00458 2.0kb upstream 2.0kb upstream 3845 true Scaffold18850: 268574-272418 Brassica rapa FPsc
Brara.K00458 2.0kb upstream 2.0kb upstream 2000 false Scaffold18850: 270419-272418 Brassica rapa FPsc
Brara.K00458 2.0kb downstream 2.0kb downstream 3845 true Scaffold18850: 266574-270418 Brassica rapa FPsc
Brara.K00458 2.0kb downstream 2.0kb downstream 2000 false Scaffold18850: 266574-268573 Brassica rapa FPsc
Brara.K00458 5.0kb upstream 5.0kb upstream 6845 true Scaffold18850: 268574-275418 Brassica rapa FPsc
Brara.K00458 5.0kb upstream 5.0kb upstream 5000 false Scaffold18850: 270419-275418 Brassica rapa FPsc
Brara.K00458 5.0kb downstream 5.0kb downstream 6845 true Scaffold18850: 263574-270418 Brassica rapa FPsc
Brara.K00458 5.0kb downstream 5.0kb downstream 5000 false Scaffold18850: 263574-268573 Brassica rapa FPsc
Brara.K00458 10.0kb upstream 10.0kb upstream 11845 true Scaffold18850: 268574-280418 Brassica rapa FPsc
Brara.K00458 10.0kb upstream 10.0kb upstream 10000 false Scaffold18850: 270419-280418 Brassica rapa FPsc
Brara.K00458 10.0kb downstream 10.0kb downstream 11845 true Scaffold18850: 258574-270418 Brassica rapa FPsc
Brara.K00458 10.0kb downstream 10.0kb downstream 10000 false Scaffold18850: 258574-268573 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361065 5261 Brassicaceae View MSA
123831116 5264 Brassicales-Malvales View MSA
124321711 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier