Gene : Bostr.10040s0149 B. stricta v1.2
Defline:  (1 of 1) KOG0107//KOG0109 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains Genomic Order:  149
Name:  ? Bostr.10040s0149 Secondary Identifier:  ? PAC:30669979
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.10040s0149 0.5kb upstream 0.5kb upstream 2891 true Scaffold10040: 1295890-1298780 Boechera stricta
Bostr.10040s0149 0.5kb upstream 0.5kb upstream 500 false Scaffold10040: 1298281-1298780 Boechera stricta
Bostr.10040s0149 0.5kb downstream 0.5kb downstream 2891 true Scaffold10040: 1295390-1298280 Boechera stricta
Bostr.10040s0149 0.5kb downstream 0.5kb downstream 500 false Scaffold10040: 1295390-1295889 Boechera stricta
Bostr.10040s0149 1.0kb upstream 1.0kb upstream 3391 true Scaffold10040: 1295890-1299280 Boechera stricta
Bostr.10040s0149 1.0kb upstream 1.0kb upstream 1000 false Scaffold10040: 1298281-1299280 Boechera stricta
Bostr.10040s0149 1.0kb downstream 1.0kb downstream 3391 true Scaffold10040: 1294890-1298280 Boechera stricta
Bostr.10040s0149 1.0kb downstream 1.0kb downstream 1000 false Scaffold10040: 1294890-1295889 Boechera stricta
Bostr.10040s0149 2.0kb upstream 2.0kb upstream 4391 true Scaffold10040: 1295890-1300280 Boechera stricta
Bostr.10040s0149 2.0kb upstream 2.0kb upstream 2000 false Scaffold10040: 1298281-1300280 Boechera stricta
Bostr.10040s0149 2.0kb downstream 2.0kb downstream 4391 true Scaffold10040: 1293890-1298280 Boechera stricta
Bostr.10040s0149 2.0kb downstream 2.0kb downstream 2000 false Scaffold10040: 1293890-1295889 Boechera stricta
Bostr.10040s0149 5.0kb upstream 5.0kb upstream 7391 true Scaffold10040: 1295890-1303280 Boechera stricta
Bostr.10040s0149 5.0kb upstream 5.0kb upstream 5000 false Scaffold10040: 1298281-1303280 Boechera stricta
Bostr.10040s0149 5.0kb downstream 5.0kb downstream 7391 true Scaffold10040: 1290890-1298280 Boechera stricta
Bostr.10040s0149 5.0kb downstream 5.0kb downstream 5000 false Scaffold10040: 1290890-1295889 Boechera stricta
Bostr.10040s0149 10.0kb upstream 10.0kb upstream 12391 true Scaffold10040: 1295890-1308280 Boechera stricta
Bostr.10040s0149 10.0kb upstream 10.0kb upstream 10000 false Scaffold10040: 1298281-1308280 Boechera stricta
Bostr.10040s0149 10.0kb downstream 10.0kb downstream 12391 true Scaffold10040: 1285890-1298280 Boechera stricta
Bostr.10040s0149 10.0kb downstream 10.0kb downstream 10000 false Scaffold10040: 1285890-1295889 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376069 5261 Brassicaceae View MSA
123832510 5264 Brassicales-Malvales View MSA
124336674 5266 SBM View MSA
124242515 5268 Malvidae View MSA
124061705 5270 Rosid View MSA
123747104 5271 Pentapetalae View MSA
122792788 5272 Eudicot View MSA
122049541 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain