Gene : Medtr2g007250 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR16166//PTHR16166:SF87 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 Description:  vacuolar protein sorting-associated protein, putative
Genomic Order:  121 Name:  ? Medtr2g007250
Secondary Identifier:  ? PAC:31063960
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g007250 0.5kb upstream 0.5kb upstream 38919 true chr2: 874974-913892 Medicago truncatula
Medtr2g007250 0.5kb upstream 0.5kb upstream 500 false chr2: 874974-875473 Medicago truncatula
Medtr2g007250 0.5kb downstream 0.5kb downstream 38919 true chr2: 875474-914392 Medicago truncatula
Medtr2g007250 0.5kb downstream 0.5kb downstream 500 false chr2: 913893-914392 Medicago truncatula
Medtr2g007250 1.0kb upstream 1.0kb upstream 39419 true chr2: 874474-913892 Medicago truncatula
Medtr2g007250 1.0kb upstream 1.0kb upstream 1000 false chr2: 874474-875473 Medicago truncatula
Medtr2g007250 1.0kb downstream 1.0kb downstream 39419 true chr2: 875474-914892 Medicago truncatula
Medtr2g007250 1.0kb downstream 1.0kb downstream 1000 false chr2: 913893-914892 Medicago truncatula
Medtr2g007250 2.0kb upstream 2.0kb upstream 40419 true chr2: 873474-913892 Medicago truncatula
Medtr2g007250 2.0kb upstream 2.0kb upstream 2000 false chr2: 873474-875473 Medicago truncatula
Medtr2g007250 2.0kb downstream 2.0kb downstream 40419 true chr2: 875474-915892 Medicago truncatula
Medtr2g007250 2.0kb downstream 2.0kb downstream 2000 false chr2: 913893-915892 Medicago truncatula
Medtr2g007250 5.0kb upstream 5.0kb upstream 43419 true chr2: 870474-913892 Medicago truncatula
Medtr2g007250 5.0kb upstream 5.0kb upstream 5000 false chr2: 870474-875473 Medicago truncatula
Medtr2g007250 5.0kb downstream 5.0kb downstream 43419 true chr2: 875474-918892 Medicago truncatula
Medtr2g007250 5.0kb downstream 5.0kb downstream 5000 false chr2: 913893-918892 Medicago truncatula
Medtr2g007250 10.0kb upstream 10.0kb upstream 48419 true chr2: 865474-913892 Medicago truncatula
Medtr2g007250 10.0kb upstream 10.0kb upstream 10000 false chr2: 865474-875473 Medicago truncatula
Medtr2g007250 10.0kb downstream 10.0kb downstream 48419 true chr2: 875474-923892 Medicago truncatula
Medtr2g007250 10.0kb downstream 10.0kb downstream 10000 false chr2: 913893-923892 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309689 5265 Fabidae View MSA
124066672 5270 Rosid View MSA
123741349 5271 Pentapetalae View MSA
122793853 5272 Eudicot View MSA
122042276 5273 Angiosperm View MSA
121346115 5274 Embryophyte View MSA
123424266 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.229       High
cufflinks 1.407        
cufflinks 1.7        
cufflinks 0.102       Low
cufflinks 1.484        
cufflinks 0.153       Low
cufflinks 0.539        
cufflinks 1.463        
cufflinks 0.27        

0 Strain