Gene : Medtr3g033420 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC Description:  RNA polymerase sigma factor
Genomic Order:  1265 Name:  ? Medtr3g033420
Secondary Identifier:  ? PAC:31053530
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g033420 0.5kb upstream 0.5kb upstream 2600 true chr3: 10683200-10685799 Medicago truncatula
Medtr3g033420 0.5kb upstream 0.5kb upstream 500 false chr3: 10685300-10685799 Medicago truncatula
Medtr3g033420 0.5kb downstream 0.5kb downstream 2600 true chr3: 10682700-10685299 Medicago truncatula
Medtr3g033420 0.5kb downstream 0.5kb downstream 500 false chr3: 10682700-10683199 Medicago truncatula
Medtr3g033420 1.0kb upstream 1.0kb upstream 3100 true chr3: 10683200-10686299 Medicago truncatula
Medtr3g033420 1.0kb upstream 1.0kb upstream 1000 false chr3: 10685300-10686299 Medicago truncatula
Medtr3g033420 1.0kb downstream 1.0kb downstream 3100 true chr3: 10682200-10685299 Medicago truncatula
Medtr3g033420 1.0kb downstream 1.0kb downstream 1000 false chr3: 10682200-10683199 Medicago truncatula
Medtr3g033420 2.0kb upstream 2.0kb upstream 4100 true chr3: 10683200-10687299 Medicago truncatula
Medtr3g033420 2.0kb upstream 2.0kb upstream 2000 false chr3: 10685300-10687299 Medicago truncatula
Medtr3g033420 2.0kb downstream 2.0kb downstream 4100 true chr3: 10681200-10685299 Medicago truncatula
Medtr3g033420 2.0kb downstream 2.0kb downstream 2000 false chr3: 10681200-10683199 Medicago truncatula
Medtr3g033420 5.0kb upstream 5.0kb upstream 7100 true chr3: 10683200-10690299 Medicago truncatula
Medtr3g033420 5.0kb upstream 5.0kb upstream 5000 false chr3: 10685300-10690299 Medicago truncatula
Medtr3g033420 5.0kb downstream 5.0kb downstream 7100 true chr3: 10678200-10685299 Medicago truncatula
Medtr3g033420 5.0kb downstream 5.0kb downstream 5000 false chr3: 10678200-10683199 Medicago truncatula
Medtr3g033420 10.0kb upstream 10.0kb upstream 12100 true chr3: 10683200-10695299 Medicago truncatula
Medtr3g033420 10.0kb upstream 10.0kb upstream 10000 false chr3: 10685300-10695299 Medicago truncatula
Medtr3g033420 10.0kb downstream 10.0kb downstream 12100 true chr3: 10673200-10685299 Medicago truncatula
Medtr3g033420 10.0kb downstream 10.0kb downstream 10000 false chr3: 10673200-10683199 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311393 5265 Fabidae View MSA
124069263 5270 Rosid View MSA
123741916 5271 Pentapetalae View MSA
122770161 5272 Eudicot View MSA
122048895 5273 Angiosperm View MSA
121311156 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low Low
cufflinks 4.352        
cufflinks 4.499        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.183     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.558        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain