Protein Family : sigma factor 4 122770161

Method ID:  5272 Method Name:  Eudicot
Sequence Alignment:  View MSA Member Count:  30
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30 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29864.t000020 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC R. communis v0.1 2106   29864: 286359-288464
Cucsa.248920 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sativus v1.0 3281   scaffold02208: 104273-107553
orange1.1g046578m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sinensis v1.1 1878   scaffold00003: 4002653-4004530
AT5G13730 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. thaliana TAIR10 SIG4 1728   Chr5: 4429110-4430837
Thhalv10013654m.g (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC E. salsugineum v1.0 1822   scaffold_2: 4495465-4497286
Ciclev10033747m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. clementina v1.0 1926   scaffold_4: 24944130-24946055
Migut.B01271 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. guttatus v2.0 2356   scaffold_2: 14910482-14912837
Araha.3105s0018 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. halleri v1.1 2180   Scaffold3105: 66093-68272
Cagra.0596s0063 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. grandiflora v1.1 1870   Scaffold596: 269059-270928
Brara.B00515 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. rapa FPsc v1.3 2600   A02: 2386524-2389123
Brara.J02068 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. rapa FPsc v1.3 2068   A10: 16017406-16019473
Bostr.2902s0107 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. stricta v1.2 2161   Scaffold2902: 529277-531437
Medtr3g033420 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. truncatula Mt4.0v1 2100   chr3: 10683200-10685299
SapurV1A.4644s0020 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. purpurea v1.0 4179   Scaffold4644: 2396-6574
SapurV1A.0027s0740 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. purpurea v1.0 4177   chr09: 4738266-4742442
Prupe.2G021900 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. persica v2.1 3612   Pp02: 2137413-2141024
Manes.10G136500 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. esculenta v6.1 2372   Chromosome10: 24778962-24781333
Kalax.0256s0050 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC K. laxiflora v1.1 2614   scaffold_256: 428696-431309
Kalax.0004s0243 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC K. laxiflora v1.1 2547   scaffold_4: 1968794-1971340
Kaladp0515s0145 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC K. fedtschenkoi v1.1 2687   Scaffold_515: 1369417-1372103
Tp57577_TGAC_v2_gene14564 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC T. pratense v2 2497   Tp57577_TGAC_v2_LG3: 31041760-31044256
Solyc01g087690.1 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. lycopersicum ITAG2.4 2449   SL2.50ch01: 82615179-82617627
Phvul.005G023100 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. vulgaris v2.1 2630   Chr05: 2076288-2078917
Potri.009G057200 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. trichocarpa v3.1 4122   Chr09: 5992464-5996585
Podel.09G058100 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. deltoides WV94 v2.1 3971   Chr09: 5983553-5987523
VIT_213s0064g00190 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC V. vinifera v2.1 3045   chr13: 21693738-21696782
Carub.0006s1191 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. rubella v1.1 1769   scaffold_6: 4427840-4429608
MD02G1302300 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. domestica v1.1 3285   Chr02: 35667119-35670403
Ca_22857 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. arietinum v1.0 4183   Ca5: 18183547-18187729
gene29494-v1.0-hybrid (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC F. vesca v2.0.a2 2471   Fvb7: 3731895-3734365

30 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Cucsa.248920.1 C. sativus v1.0 122770161 sigma factor 4 1 5272 Eudicot
orange1.1g046578m C. sinensis v1.1 122770161 sigma factor 4 1 5272 Eudicot
Thhalv10013654m E. salsugineum v1.0 122770161 sigma factor 4 1 5272 Eudicot
Cagra.0596s0063.1.p C. grandiflora v1.1 122770161 sigma factor 4 1 5272 Eudicot
Migut.B01271.1.p M. guttatus v2.0 122770161 sigma factor 4 1 5272 Eudicot
Brara.J02068.1.p B. rapa FPsc v1.3 122770161 sigma factor 4 2 5272 Eudicot
Prupe.2G021900.1.p P. persica v2.1 122770161 sigma factor 4 1 5272 Eudicot
Manes.10G136500.1.p M. esculenta v6.1 122770161 sigma factor 4 1 5272 Eudicot
Kalax.0004s0243.1.p K. laxiflora v1.1 122770161 sigma factor 4 2 5272 Eudicot
Kalax.0256s0050.1.p K. laxiflora v1.1 122770161 sigma factor 4 2 5272 Eudicot
Kaladp0515s0145.1.p K. fedtschenkoi v1.1 122770161 sigma factor 4 1 5272 Eudicot
Phvul.005G023100.1.p P. vulgaris v2.1 122770161 sigma factor 4 1 5272 Eudicot
Potri.009G057200.1.p P. trichocarpa v3.1 122770161 sigma factor 4 1 5272 Eudicot
VIT_213s0064g00190.2 V. vinifera v2.1 122770161 sigma factor 4 1 5272 Eudicot
gene29494-v1.0-hybrid.t1 F. vesca v2.0.a2 122770161 sigma factor 4 1 5272 Eudicot
29864.m001444 R. communis v0.1 122770161 sigma factor 4 1 5272 Eudicot
AT5G13730.1 A. thaliana TAIR10 122770161 sigma factor 4 1 5272 Eudicot
Ciclev10033747m C. clementina v1.0 122770161 sigma factor 4 1 5272 Eudicot
Araha.3105s0018.1.p A. halleri v1.1 122770161 sigma factor 4 1 5272 Eudicot
Brara.B00515.1.p B. rapa FPsc v1.3 122770161 sigma factor 4 2 5272 Eudicot
Bostr.2902s0107.1.p B. stricta v1.2 122770161 sigma factor 4 1 5272 Eudicot
Medtr3g033420.1 M. truncatula Mt4.0v1 122770161 sigma factor 4 1 5272 Eudicot
SapurV1A.4644s0020.1.p S. purpurea v1.0 122770161 sigma factor 4 2 5272 Eudicot
SapurV1A.0027s0740.1.p S. purpurea v1.0 122770161 sigma factor 4 2 5272 Eudicot
Tp57577_TGAC_v2_mRNA15049 T. pratense v2 122770161 sigma factor 4 1 5272 Eudicot
Solyc01g087690.1.1 S. lycopersicum ITAG2.4 122770161 sigma factor 4 1 5272 Eudicot
Podel.09G058100.1.p P. deltoides WV94 v2.1 122770161 sigma factor 4 1 5272 Eudicot
Carub.0006s1191.1.p C. rubella v1.1 122770161 sigma factor 4 1 5272 Eudicot
MD02G1302300 M. domestica v1.1 122770161 sigma factor 4 1 5272 Eudicot
Ca_22857 C. arietinum v1.0 122770161 sigma factor 4 1 5272 Eudicot