Gene : Solyc01g087690.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC Description:  RNA polymerase sigma factor (AHRD V1 ***- Q59965_SYNP2); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2
Genomic Order:  2223 Name:  ? Solyc01g087690.1
Secondary Identifier:  ? PAC:36137778
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g087690.1 0.5kb upstream 0.5kb upstream 2949 true SL2.50ch01: 82615179-82618127 Solanum lycopersicum
Solyc01g087690.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 82617628-82618127 Solanum lycopersicum
Solyc01g087690.1 0.5kb downstream 0.5kb downstream 2949 true SL2.50ch01: 82614679-82617627 Solanum lycopersicum
Solyc01g087690.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 82614679-82615178 Solanum lycopersicum
Solyc01g087690.1 1.0kb upstream 1.0kb upstream 3449 true SL2.50ch01: 82615179-82618627 Solanum lycopersicum
Solyc01g087690.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 82617628-82618627 Solanum lycopersicum
Solyc01g087690.1 1.0kb downstream 1.0kb downstream 3449 true SL2.50ch01: 82614179-82617627 Solanum lycopersicum
Solyc01g087690.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 82614179-82615178 Solanum lycopersicum
Solyc01g087690.1 2.0kb upstream 2.0kb upstream 4449 true SL2.50ch01: 82615179-82619627 Solanum lycopersicum
Solyc01g087690.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 82617628-82619627 Solanum lycopersicum
Solyc01g087690.1 2.0kb downstream 2.0kb downstream 4449 true SL2.50ch01: 82613179-82617627 Solanum lycopersicum
Solyc01g087690.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 82613179-82615178 Solanum lycopersicum
Solyc01g087690.1 5.0kb upstream 5.0kb upstream 7449 true SL2.50ch01: 82615179-82622627 Solanum lycopersicum
Solyc01g087690.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 82617628-82622627 Solanum lycopersicum
Solyc01g087690.1 5.0kb downstream 5.0kb downstream 7449 true SL2.50ch01: 82610179-82617627 Solanum lycopersicum
Solyc01g087690.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 82610179-82615178 Solanum lycopersicum
Solyc01g087690.1 10.0kb upstream 10.0kb upstream 12449 true SL2.50ch01: 82615179-82627627 Solanum lycopersicum
Solyc01g087690.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 82617628-82627627 Solanum lycopersicum
Solyc01g087690.1 10.0kb downstream 10.0kb downstream 12449 true SL2.50ch01: 82605179-82617627 Solanum lycopersicum
Solyc01g087690.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 82605179-82615178 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121414672 5263 Asterids View MSA
123741916 5271 Pentapetalae View MSA
122770161 5272 Eudicot View MSA
122048895 5273 Angiosperm View MSA
121311156 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain