Protein Family : sigma factor 4 122048895

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  44
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44 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29864.t000020 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC R. communis v0.1 2106   29864: 286359-288464
Cucsa.248920 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sativus v1.0 3281   scaffold02208: 104273-107553
orange1.1g046578m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sinensis v1.1 1878   scaffold00003: 4002653-4004530
AT5G13730 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. thaliana TAIR10 SIG4 1728   Chr5: 4429110-4430837
Thhalv10013654m.g (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC E. salsugineum v1.0 1822   scaffold_2: 4495465-4497286
Ciclev10033747m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. clementina v1.0 1926   scaffold_4: 24944130-24946055
Migut.B01271 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. guttatus v2.0 2356   scaffold_2: 14910482-14912837
Araha.3105s0018 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. halleri v1.1 2180   Scaffold3105: 66093-68272
Araha.11756s0282 (1 of 1) PTHR30376 - SIGMA FACTOR RPOH HEAT SHOCK RELATED A. halleri v1.1 858   Scaffold11756: 393118-393975
Cagra.0596s0063 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. grandiflora v1.1 1870   Scaffold596: 269059-270928
Brara.B00515 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. rapa FPsc v1.3 2600   A02: 2386524-2389123
Brara.J02068 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. rapa FPsc v1.3 2068   A10: 16017406-16019473
Bostr.2902s0107 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. stricta v1.2 2161   Scaffold2902: 529277-531437
Medtr3g033420 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. truncatula Mt4.0v1 2100   chr3: 10683200-10685299
Medtr3g033150 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. truncatula Mt4.0v1 555   chr3: 10538516-10539070
SapurV1A.1189s0050 (1 of 3) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED S. purpurea v1.0 2394   chr19: 3803936-3806329
SapurV1A.4644s0020 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. purpurea v1.0 4179   Scaffold4644: 2396-6574
SapurV1A.0027s0740 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. purpurea v1.0 4177   chr09: 4738266-4742442
evm_27.TU.AmTr_v1.0_scaffold00025.401 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. trichopoda v1.0 3031   AmTr_v1.0_scaffold00025: 6136348-6139378
Traes_4DL_65B3128BF (1 of 8) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO T. aestivum v2.2 2858   ta_iwgsc_4dl_v3_14462078: 2645-5502
Prupe.2G021900 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. persica v2.1 3612   Pp02: 2137413-2141024
GSMUA_Achr4G18530_001 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. acuminata v1 10730   chr4: 19431840-19442569
GSMUA_Achr4G30300_001 (1 of 2) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC M. acuminata v1 1709   chr4: 27970996-27972704
Manes.10G136500 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. esculenta v6.1 2372   Chromosome10: 24778962-24781333
Kalax.0256s0050 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC K. laxiflora v1.1 2614   scaffold_256: 428696-431309
Kalax.0004s0243 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC K. laxiflora v1.1 2547   scaffold_4: 1968794-1971340
Bradi2g14545 (1 of 2) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC B. distachyon v3.1 1652   Bd2: 13125055-13126706
Aco000633 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. comosus v3 2127   LG12: 541879-544005
Kaladp0515s0145 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC K. fedtschenkoi v1.1 2687   Scaffold_515: 1369417-1372103
AL6G24340 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. lyrata v2.1 1275   scaffold_6: 5540023-5541297

44 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Cucsa.248920.1 C. sativus v1.0 122048895 sigma factor 4 1 5273 Angiosperm
orange1.1g046578m C. sinensis v1.1 122048895 sigma factor 4 1 5273 Angiosperm
Thhalv10013654m E. salsugineum v1.0 122048895 sigma factor 4 1 5273 Angiosperm
Araha.11756s0282.1.p A. halleri v1.1 122048895 sigma factor 4 2 5273 Angiosperm
Cagra.0596s0063.1.p C. grandiflora v1.1 122048895 sigma factor 4 1 5273 Angiosperm
Migut.B01271.1.p M. guttatus v2.0 122048895 sigma factor 4 1 5273 Angiosperm
Brara.J02068.1.p B. rapa FPsc v1.3 122048895 sigma factor 4 2 5273 Angiosperm
SapurV1A.1189s0050.1.p S. purpurea v1.0 122048895 sigma factor 4 3 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00025.401 A. trichopoda v1.0 122048895 sigma factor 4 1 5273 Angiosperm
Traes_4DL_65B3128BF.2 T. aestivum v2.2 122048895 sigma factor 4 1 5273 Angiosperm
Prupe.2G021900.1.p P. persica v2.1 122048895 sigma factor 4 1 5273 Angiosperm
GSMUA_Achr4P30300_001 M. acuminata v1 122048895 sigma factor 4 2 5273 Angiosperm
GSMUA_Achr4P18530_001 M. acuminata v1 122048895 sigma factor 4 2 5273 Angiosperm
Manes.10G136500.1.p M. esculenta v6.1 122048895 sigma factor 4 1 5273 Angiosperm
Kalax.0004s0243.1.p K. laxiflora v1.1 122048895 sigma factor 4 2 5273 Angiosperm
Bradi2g14545.1.p B. distachyon v3.1 122048895 sigma factor 4 1 5273 Angiosperm
Aco000633.1 A. comosus v3 122048895 sigma factor 4 1 5273 Angiosperm
Kaladp0515s0145.1.p K. fedtschenkoi v1.1 122048895 sigma factor 4 1 5273 Angiosperm
AL6G24340.t2 A. lyrata v2.1 122048895 sigma factor 4 1 5273 Angiosperm
Tp57577_TGAC_v2_mRNA8372 T. pratense v2 122048895 sigma factor 4 2 5273 Angiosperm
Phvul.009G117301.1.p P. vulgaris v2.1 122048895 sigma factor 4 2 5273 Angiosperm
Phvul.005G023100.1.p P. vulgaris v2.1 122048895 sigma factor 4 2 5273 Angiosperm
Potri.009G057200.1.p P. trichocarpa v3.1 122048895 sigma factor 4 1 5273 Angiosperm
Pavir.8NG038000.1.p P. virgatum v4.1 122048895 sigma factor 4 1 5273 Angiosperm
VIT_213s0064g00190.2 V. vinifera v2.1 122048895 sigma factor 4 1 5273 Angiosperm
HORVU7Hr1G069520.2 H. vulgare r1 122048895 sigma factor 4 1 5273 Angiosperm
gene29494-v1.0-hybrid.t1 F. vesca v2.0.a2 122048895 sigma factor 4 1 5273 Angiosperm
29864.m001444 R. communis v0.1 122048895 sigma factor 4 1 5273 Angiosperm
AT5G13730.1 A. thaliana TAIR10 122048895 sigma factor 4 1 5273 Angiosperm
Ciclev10033747m C. clementina v1.0 122048895 sigma factor 4 1 5273 Angiosperm