Gene : Bradi2g14545 B. distachyon v3.1
Defline:  (1 of 2) PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR SIGC Genomic Order:  1872
Name:  ? Bradi2g14545 Secondary Identifier:  ? PAC:32771651
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g14545 0.5kb upstream 0.5kb upstream 2152 true Bd2: 13125055-13127206 Brachypodium distachyon
Bradi2g14545 0.5kb upstream 0.5kb upstream 500 false Bd2: 13126707-13127206 Brachypodium distachyon
Bradi2g14545 0.5kb downstream 0.5kb downstream 2152 true Bd2: 13124555-13126706 Brachypodium distachyon
Bradi2g14545 0.5kb downstream 0.5kb downstream 500 false Bd2: 13124555-13125054 Brachypodium distachyon
Bradi2g14545 1.0kb upstream 1.0kb upstream 2652 true Bd2: 13125055-13127706 Brachypodium distachyon
Bradi2g14545 1.0kb upstream 1.0kb upstream 1000 false Bd2: 13126707-13127706 Brachypodium distachyon
Bradi2g14545 1.0kb downstream 1.0kb downstream 2652 true Bd2: 13124055-13126706 Brachypodium distachyon
Bradi2g14545 1.0kb downstream 1.0kb downstream 1000 false Bd2: 13124055-13125054 Brachypodium distachyon
Bradi2g14545 2.0kb upstream 2.0kb upstream 3652 true Bd2: 13125055-13128706 Brachypodium distachyon
Bradi2g14545 2.0kb upstream 2.0kb upstream 2000 false Bd2: 13126707-13128706 Brachypodium distachyon
Bradi2g14545 2.0kb downstream 2.0kb downstream 3652 true Bd2: 13123055-13126706 Brachypodium distachyon
Bradi2g14545 2.0kb downstream 2.0kb downstream 2000 false Bd2: 13123055-13125054 Brachypodium distachyon
Bradi2g14545 5.0kb upstream 5.0kb upstream 6652 true Bd2: 13125055-13131706 Brachypodium distachyon
Bradi2g14545 5.0kb upstream 5.0kb upstream 5000 false Bd2: 13126707-13131706 Brachypodium distachyon
Bradi2g14545 5.0kb downstream 5.0kb downstream 6652 true Bd2: 13120055-13126706 Brachypodium distachyon
Bradi2g14545 5.0kb downstream 5.0kb downstream 5000 false Bd2: 13120055-13125054 Brachypodium distachyon
Bradi2g14545 10.0kb upstream 10.0kb upstream 11652 true Bd2: 13125055-13136706 Brachypodium distachyon
Bradi2g14545 10.0kb upstream 10.0kb upstream 10000 false Bd2: 13126707-13136706 Brachypodium distachyon
Bradi2g14545 10.0kb downstream 10.0kb downstream 11652 true Bd2: 13115055-13126706 Brachypodium distachyon
Bradi2g14545 10.0kb downstream 10.0kb downstream 10000 false Bd2: 13115055-13125054 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582850 5269 Grass View MSA
122048895 5273 Angiosperm View MSA
121311156 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.314       Low
cufflinks 1.006        
cufflinks 0.918        
cufflinks 0.838        
cufflinks 0.35       Low
cufflinks 0.863        
cufflinks 0.946        
cufflinks 0.608        
cufflinks 0.794        
cufflinks 0.858        
cufflinks 0.906        
cufflinks 0.595        
cufflinks 0.691        
cufflinks 0.735        
cufflinks 0.308       Low
cufflinks 0.812        
cufflinks 1.498       High
cufflinks 0.738        
cufflinks 1.486       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.692        
cufflinks 1.159       High
cufflinks 0.669        
cufflinks 0.636        
cufflinks 0.838        
cufflinks 1.004        
cufflinks 0.328       Low
cufflinks 0.916        
cufflinks 0.893        
cufflinks 0.539        

0 Strain