Gene : Phvul.005G023100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC Genomic Order:  228
Name:  ? Phvul.005G023100 Secondary Identifier:  ? PAC:37154150
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G023100 0.5kb upstream 0.5kb upstream 3130 true Chr05: 2076288-2079417 Phaseolus vulgaris
Phvul.005G023100 0.5kb upstream 0.5kb upstream 500 false Chr05: 2078918-2079417 Phaseolus vulgaris
Phvul.005G023100 0.5kb downstream 0.5kb downstream 3130 true Chr05: 2075788-2078917 Phaseolus vulgaris
Phvul.005G023100 0.5kb downstream 0.5kb downstream 500 false Chr05: 2075788-2076287 Phaseolus vulgaris
Phvul.005G023100 1.0kb upstream 1.0kb upstream 3630 true Chr05: 2076288-2079917 Phaseolus vulgaris
Phvul.005G023100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2078918-2079917 Phaseolus vulgaris
Phvul.005G023100 1.0kb downstream 1.0kb downstream 3630 true Chr05: 2075288-2078917 Phaseolus vulgaris
Phvul.005G023100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2075288-2076287 Phaseolus vulgaris
Phvul.005G023100 2.0kb upstream 2.0kb upstream 4630 true Chr05: 2076288-2080917 Phaseolus vulgaris
Phvul.005G023100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2078918-2080917 Phaseolus vulgaris
Phvul.005G023100 2.0kb downstream 2.0kb downstream 4630 true Chr05: 2074288-2078917 Phaseolus vulgaris
Phvul.005G023100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2074288-2076287 Phaseolus vulgaris
Phvul.005G023100 5.0kb upstream 5.0kb upstream 7630 true Chr05: 2076288-2083917 Phaseolus vulgaris
Phvul.005G023100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2078918-2083917 Phaseolus vulgaris
Phvul.005G023100 5.0kb downstream 5.0kb downstream 7630 true Chr05: 2071288-2078917 Phaseolus vulgaris
Phvul.005G023100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2071288-2076287 Phaseolus vulgaris
Phvul.005G023100 10.0kb upstream 10.0kb upstream 12630 true Chr05: 2076288-2088917 Phaseolus vulgaris
Phvul.005G023100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2078918-2088917 Phaseolus vulgaris
Phvul.005G023100 10.0kb downstream 10.0kb downstream 12630 true Chr05: 2066288-2078917 Phaseolus vulgaris
Phvul.005G023100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2066288-2076287 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311393 5265 Fabidae View MSA
124069263 5270 Rosid View MSA
123741916 5271 Pentapetalae View MSA
122770161 5272 Eudicot View MSA
122048895 5273 Angiosperm View MSA
121311156 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.63027 0.0 12.8842    
cufflinks 1.7126 0.0 11.512    
cufflinks 37.049 0.0 171.8   High
cufflinks 0.544059 0.0 3.53684 Low  
cufflinks 2.0541 0.0 13.7126    
cufflinks 9.16917 0.0 49.5244   High
cufflinks 0.697263 0.0 6.07935    
cufflinks 0.607177 0.0 5.66148    
cufflinks 0.524744 0.0 4.8761    
cufflinks 0.719199 0.0 6.31299    
cufflinks 2.04447 0.0 14.0942    

0 Strain