Gene : Eucgr.B02683 E. grandis v2.0
Defline:  (1 of 9) PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE 1 Genomic Order:  2176
Name:  ? Eucgr.B02683 Secondary Identifier:  ? PAC:32060520
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.B02683 0.5kb upstream 0.5kb upstream 13130 true Chr02: 46952790-46965919 Eucalyptus grandis
Eucgr.B02683 0.5kb upstream 0.5kb upstream 500 false Chr02: 46965420-46965919 Eucalyptus grandis
Eucgr.B02683 0.5kb downstream 0.5kb downstream 13130 true Chr02: 46952290-46965419 Eucalyptus grandis
Eucgr.B02683 0.5kb downstream 0.5kb downstream 500 false Chr02: 46952290-46952789 Eucalyptus grandis
Eucgr.B02683 1.0kb upstream 1.0kb upstream 13630 true Chr02: 46952790-46966419 Eucalyptus grandis
Eucgr.B02683 1.0kb upstream 1.0kb upstream 1000 false Chr02: 46965420-46966419 Eucalyptus grandis
Eucgr.B02683 1.0kb downstream 1.0kb downstream 13630 true Chr02: 46951790-46965419 Eucalyptus grandis
Eucgr.B02683 1.0kb downstream 1.0kb downstream 1000 false Chr02: 46951790-46952789 Eucalyptus grandis
Eucgr.B02683 2.0kb upstream 2.0kb upstream 14630 true Chr02: 46952790-46967419 Eucalyptus grandis
Eucgr.B02683 2.0kb upstream 2.0kb upstream 2000 false Chr02: 46965420-46967419 Eucalyptus grandis
Eucgr.B02683 2.0kb downstream 2.0kb downstream 14630 true Chr02: 46950790-46965419 Eucalyptus grandis
Eucgr.B02683 2.0kb downstream 2.0kb downstream 2000 false Chr02: 46950790-46952789 Eucalyptus grandis
Eucgr.B02683 5.0kb upstream 5.0kb upstream 17630 true Chr02: 46952790-46970419 Eucalyptus grandis
Eucgr.B02683 5.0kb upstream 5.0kb upstream 5000 false Chr02: 46965420-46970419 Eucalyptus grandis
Eucgr.B02683 5.0kb downstream 5.0kb downstream 17630 true Chr02: 46947790-46965419 Eucalyptus grandis
Eucgr.B02683 5.0kb downstream 5.0kb downstream 5000 false Chr02: 46947790-46952789 Eucalyptus grandis
Eucgr.B02683 10.0kb upstream 10.0kb upstream 22630 true Chr02: 46952790-46975419 Eucalyptus grandis
Eucgr.B02683 10.0kb upstream 10.0kb upstream 10000 false Chr02: 46965420-46975419 Eucalyptus grandis
Eucgr.B02683 10.0kb downstream 10.0kb downstream 22630 true Chr02: 46942790-46965419 Eucalyptus grandis
Eucgr.B02683 10.0kb downstream 10.0kb downstream 10000 false Chr02: 46942790-46952789 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067400 5270 Rosid View MSA
123752294 5271 Pentapetalae View MSA
122797649 5272 Eudicot View MSA
122047757 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.18734 0.0 20.4171    
cufflinks 9.0647 0.0 20.1105    
cufflinks 11.7488 0.0 25.9892    
cufflinks 7.5189 0.0 16.7499    
cufflinks 11.8528 0.0 26.2215    
cufflinks 3.73912 0.0 8.77352   Low

0 Strain