Gene : Eucgr.K00562 E. grandis v2.0
Defline:  (1 of 45) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  479
Name:  ? Eucgr.K00562 Secondary Identifier:  ? PAC:32068229
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00562 0.5kb upstream 0.5kb upstream 5297 true Chr11: 6264541-6269837 Eucalyptus grandis
Eucgr.K00562 0.5kb upstream 0.5kb upstream 500 false Chr11: 6269338-6269837 Eucalyptus grandis
Eucgr.K00562 0.5kb downstream 0.5kb downstream 5297 true Chr11: 6264041-6269337 Eucalyptus grandis
Eucgr.K00562 0.5kb downstream 0.5kb downstream 500 false Chr11: 6264041-6264540 Eucalyptus grandis
Eucgr.K00562 1.0kb upstream 1.0kb upstream 5797 true Chr11: 6264541-6270337 Eucalyptus grandis
Eucgr.K00562 1.0kb upstream 1.0kb upstream 1000 false Chr11: 6269338-6270337 Eucalyptus grandis
Eucgr.K00562 1.0kb downstream 1.0kb downstream 5797 true Chr11: 6263541-6269337 Eucalyptus grandis
Eucgr.K00562 1.0kb downstream 1.0kb downstream 1000 false Chr11: 6263541-6264540 Eucalyptus grandis
Eucgr.K00562 2.0kb upstream 2.0kb upstream 6797 true Chr11: 6264541-6271337 Eucalyptus grandis
Eucgr.K00562 2.0kb upstream 2.0kb upstream 2000 false Chr11: 6269338-6271337 Eucalyptus grandis
Eucgr.K00562 2.0kb downstream 2.0kb downstream 6797 true Chr11: 6262541-6269337 Eucalyptus grandis
Eucgr.K00562 2.0kb downstream 2.0kb downstream 2000 false Chr11: 6262541-6264540 Eucalyptus grandis
Eucgr.K00562 5.0kb upstream 5.0kb upstream 9797 true Chr11: 6264541-6274337 Eucalyptus grandis
Eucgr.K00562 5.0kb upstream 5.0kb upstream 5000 false Chr11: 6269338-6274337 Eucalyptus grandis
Eucgr.K00562 5.0kb downstream 5.0kb downstream 9797 true Chr11: 6259541-6269337 Eucalyptus grandis
Eucgr.K00562 5.0kb downstream 5.0kb downstream 5000 false Chr11: 6259541-6264540 Eucalyptus grandis
Eucgr.K00562 10.0kb upstream 10.0kb upstream 14797 true Chr11: 6264541-6279337 Eucalyptus grandis
Eucgr.K00562 10.0kb upstream 10.0kb upstream 10000 false Chr11: 6269338-6279337 Eucalyptus grandis
Eucgr.K00562 10.0kb downstream 10.0kb downstream 14797 true Chr11: 6254541-6269337 Eucalyptus grandis
Eucgr.K00562 10.0kb downstream 10.0kb downstream 10000 false Chr11: 6254541-6264540 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067536 5270 Rosid View MSA
123744386 5271 Pentapetalae View MSA
122790869 5272 Eudicot View MSA
122045160 5273 Angiosperm View MSA
121348435 5274 Embryophyte View MSA
123380865 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0389 0.0 25.0327    
cufflinks 19.6534 0.0 44.4803    
cufflinks 8.47514 0.0 19.7189   Low
cufflinks 27.6892 0.0 63.9699    
cufflinks 37.3085 0.0 88.7102   High
cufflinks 10.0397 0.0 28.07    

0 Strain