Gene : Eucgr.K03379 E. grandis v2.0
Defline:  (1 of 1) KOG3428 - Small nuclear ribonucleoprotein SMD1 and related snRNPs Genomic Order:  2818
Name:  ? Eucgr.K03379 Secondary Identifier:  ? PAC:32066496
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K03379 0.5kb upstream 0.5kb upstream 4151 true Chr11: 42032153-42036303 Eucalyptus grandis
Eucgr.K03379 0.5kb upstream 0.5kb upstream 500 false Chr11: 42035804-42036303 Eucalyptus grandis
Eucgr.K03379 0.5kb downstream 0.5kb downstream 4151 true Chr11: 42031653-42035803 Eucalyptus grandis
Eucgr.K03379 0.5kb downstream 0.5kb downstream 500 false Chr11: 42031653-42032152 Eucalyptus grandis
Eucgr.K03379 1.0kb upstream 1.0kb upstream 4651 true Chr11: 42032153-42036803 Eucalyptus grandis
Eucgr.K03379 1.0kb upstream 1.0kb upstream 1000 false Chr11: 42035804-42036803 Eucalyptus grandis
Eucgr.K03379 1.0kb downstream 1.0kb downstream 4651 true Chr11: 42031153-42035803 Eucalyptus grandis
Eucgr.K03379 1.0kb downstream 1.0kb downstream 1000 false Chr11: 42031153-42032152 Eucalyptus grandis
Eucgr.K03379 2.0kb upstream 2.0kb upstream 5651 true Chr11: 42032153-42037803 Eucalyptus grandis
Eucgr.K03379 2.0kb upstream 2.0kb upstream 2000 false Chr11: 42035804-42037803 Eucalyptus grandis
Eucgr.K03379 2.0kb downstream 2.0kb downstream 5651 true Chr11: 42030153-42035803 Eucalyptus grandis
Eucgr.K03379 2.0kb downstream 2.0kb downstream 2000 false Chr11: 42030153-42032152 Eucalyptus grandis
Eucgr.K03379 5.0kb upstream 5.0kb upstream 8651 true Chr11: 42032153-42040803 Eucalyptus grandis
Eucgr.K03379 5.0kb upstream 5.0kb upstream 5000 false Chr11: 42035804-42040803 Eucalyptus grandis
Eucgr.K03379 5.0kb downstream 5.0kb downstream 8651 true Chr11: 42027153-42035803 Eucalyptus grandis
Eucgr.K03379 5.0kb downstream 5.0kb downstream 5000 false Chr11: 42027153-42032152 Eucalyptus grandis
Eucgr.K03379 10.0kb upstream 10.0kb upstream 13651 true Chr11: 42032153-42045803 Eucalyptus grandis
Eucgr.K03379 10.0kb upstream 10.0kb upstream 10000 false Chr11: 42035804-42045803 Eucalyptus grandis
Eucgr.K03379 10.0kb downstream 10.0kb downstream 13651 true Chr11: 42022153-42035803 Eucalyptus grandis
Eucgr.K03379 10.0kb downstream 10.0kb downstream 10000 false Chr11: 42022153-42032152 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.8673 0.0 107.661 High  
cufflinks 21.775 0.0 50.4127   Low
cufflinks 36.9784 0.0 83.4778 High  
cufflinks 34.3285 0.0 77.5681    
cufflinks 70.4983 0.0 159.826 High High
cufflinks 32.9283 0.0 75.5741    

0 Strain