Protein Domain : IPR005263

Type:  Family Name:  4-hydroxy-tetrahydrodipicolinate synthase, DapA
Description:  4-hydroxy-tetrahydrodipicolinate synthase dapA is a homotetrameric enzyme of lysine biosynthesis. It catalyses the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) []. E. coli has several paralogs closely related to dihydrodipicoline synthase, as well as the more distant N-acetylneuraminate lyase. It is worth noting that despite the real product of this enzyme being 4-hydroxy-2,3,4,5-tetrahydro-L,L-dipicolinic acid, it is still known in most publications as dihydropicolinate synthase (DHDPS).The sequences of dapA from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers arerelated by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel []. Short Name:  DapA

1 Child Features

DB identifier Type Name
IPR012691 Family 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase variant

2 Contains

DB identifier Type Name
IPR020624 Conserved_site Schiff base-forming aldolase, conserved site
IPR020625 Active_site Schiff base-forming aldolase, active site

2 Cross Referencess

Identifier
TIGR00674
MF_00418

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0008840 IPR005263
GO:0009089 IPR005263

2 Ontology Annotations

GO Term Gene Name
GO:0008840 IPR005263
GO:0009089 IPR005263

1 Parent Features

DB identifier Type Name
IPR002220 Family DapA-like

663 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
179125 D8SEQ0 PAC:15407552 Selaginella moellendorffii 368  
evm.model.supercontig_18.130 PAC:16411272 Carica papaya 365  
29830.m001442 B9S6U4 PAC:16810184 Ricinus communis 367  
33535.m000028 B9TF72 PAC:16825890 Ricinus communis 297  
Cucsa.257740.2 PAC:16972751 Cucumis sativus 311  
Cucsa.257740.1 PAC:16972750 Cucumis sativus 367  
orange1.1g018253m A0A067GPN1 PAC:18107488 Citrus sinensis 359  
orange1.1g018443m A0A067GSD4 PAC:18107489 Citrus sinensis 356  
AT3G60880.1 Q9LZX6 PAC:19664668 Arabidopsis thaliana 364  
AT3G60880.2 Q9LZX6 PAC:19664667 Arabidopsis thaliana 365  
AT2G45440.1 Q9FVC8 PAC:19640355 Arabidopsis thaliana 365  
Thhalv10006047m V4L157 PAC:20190682 Eutrema salsugineum 365  
Thhalv10001513m V4LHD2 PAC:20189237 Eutrema salsugineum 364  
Thhalv10001510m V4L6A4 PAC:20189236 Eutrema salsugineum 365  
Ciclev10001707m V4T131 PAC:20785710 Citrus clementina 346  
Ciclev10001621m V4SGM3 PAC:20785709 Citrus clementina 359  
Lus10015861 PAC:23163276 Linum usitatissimum 362  
Lus10009302 PAC:23141878 Linum usitatissimum 362  
Potri.002G149500.1 B9GPI1 PAC:27022110 Populus trichocarpa 365  
Potri.014G071100.3 A0A2K1XRP0 PAC:27035191 Populus trichocarpa 318  
Potri.014G071100.2 PAC:27035190 Populus trichocarpa 362  
Potri.014G071100.1 B9IC12 PAC:27035189 Populus trichocarpa 363  
Gorai.004G160600.1 A0A0D2R5Q5 PAC:26776025 Gossypium raimondii 365  
Gorai.008G114500.1 A0A0D2SYZ8 PAC:26817515 Gossypium raimondii 365  
27640 I0Z625 PAC:27390578 Coccomyxa subellipsoidea C-169 354  
55708 C1MLG6 PAC:27343166 Micromonas pusilla CCMP1545 358  
77527 PAC:27399422 Micromonas sp RCC299 312  
78169 PAC:27399311 Micromonas sp RCC299 312  
31602 A4RX84 PAC:27416719 Ostreococcus lucimarinus 369  
Thecc1EG005490t1 A0A061E1S6 PAC:27432152 Theobroma cacao 365  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7853400
            9559056
            15066435