Gene : Seita.9G089700 S. italica v2.2
Defline:  (1 of 1) PTHR24423:SF493 - PHYTOCHROME C Genomic Order:  897
Name:  ? Seita.9G089700 Secondary Identifier:  ? PAC:32691191
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G089700 0.5kb upstream 0.5kb upstream 5886 true scaffold_9: 5411575-5417460 Setaria italica
Seita.9G089700 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 5416961-5417460 Setaria italica
Seita.9G089700 0.5kb downstream 0.5kb downstream 5886 true scaffold_9: 5411075-5416960 Setaria italica
Seita.9G089700 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 5411075-5411574 Setaria italica
Seita.9G089700 1.0kb upstream 1.0kb upstream 6386 true scaffold_9: 5411575-5417960 Setaria italica
Seita.9G089700 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 5416961-5417960 Setaria italica
Seita.9G089700 1.0kb downstream 1.0kb downstream 6386 true scaffold_9: 5410575-5416960 Setaria italica
Seita.9G089700 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 5410575-5411574 Setaria italica
Seita.9G089700 2.0kb upstream 2.0kb upstream 7386 true scaffold_9: 5411575-5418960 Setaria italica
Seita.9G089700 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 5416961-5418960 Setaria italica
Seita.9G089700 2.0kb downstream 2.0kb downstream 7386 true scaffold_9: 5409575-5416960 Setaria italica
Seita.9G089700 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 5409575-5411574 Setaria italica
Seita.9G089700 5.0kb upstream 5.0kb upstream 10386 true scaffold_9: 5411575-5421960 Setaria italica
Seita.9G089700 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 5416961-5421960 Setaria italica
Seita.9G089700 5.0kb downstream 5.0kb downstream 10386 true scaffold_9: 5406575-5416960 Setaria italica
Seita.9G089700 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 5406575-5411574 Setaria italica
Seita.9G089700 10.0kb upstream 10.0kb upstream 15386 true scaffold_9: 5411575-5426960 Setaria italica
Seita.9G089700 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 5416961-5426960 Setaria italica
Seita.9G089700 10.0kb downstream 10.0kb downstream 15386 true scaffold_9: 5401575-5416960 Setaria italica
Seita.9G089700 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 5401575-5411574 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026532 5273 Angiosperm View MSA
122189026 5267 Panicoideae View MSA
124569853 5269 Grass View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.255     High  
cufflinks 32.799     High  
cufflinks 46.065     High High
cufflinks 37.995     High  
cufflinks 35.148     High  
cufflinks 34.735     High  
cufflinks 30.686     High  
cufflinks 26.834     High  
cufflinks 30.483     High  
cufflinks 19.824     High  
cufflinks 33.687     High  
cufflinks 9.285       Low
cufflinks 16.04     High  
cufflinks 28.374     High  
cufflinks 8.662       Low
cufflinks 43.827     High  
cufflinks 10.432       Low
cufflinks 57.927     High High
cufflinks 25.556     High  
cufflinks 10.471       Low

0 Strain