Gene : AT3G62110 A. thaliana TAIR10
Defline:  (1 of 33) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  5289
Name:  ? AT3G62110 Secondary Identifier:  ? PAC:19660795
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62110 0.5kb upstream 0.5kb upstream 3511 true Chr3: 22997031-23000541 Arabidopsis thaliana
AT3G62110 0.5kb upstream 0.5kb upstream 500 false Chr3: 23000042-23000541 Arabidopsis thaliana
AT3G62110 0.5kb downstream 0.5kb downstream 3511 true Chr3: 22996531-23000041 Arabidopsis thaliana
AT3G62110 0.5kb downstream 0.5kb downstream 500 false Chr3: 22996531-22997030 Arabidopsis thaliana
AT3G62110 1.0kb upstream 1.0kb upstream 4011 true Chr3: 22997031-23001041 Arabidopsis thaliana
AT3G62110 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23000042-23001041 Arabidopsis thaliana
AT3G62110 1.0kb downstream 1.0kb downstream 4011 true Chr3: 22996031-23000041 Arabidopsis thaliana
AT3G62110 1.0kb downstream 1.0kb downstream 1000 false Chr3: 22996031-22997030 Arabidopsis thaliana
AT3G62110 2.0kb upstream 2.0kb upstream 5011 true Chr3: 22997031-23002041 Arabidopsis thaliana
AT3G62110 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23000042-23002041 Arabidopsis thaliana
AT3G62110 2.0kb downstream 2.0kb downstream 5011 true Chr3: 22995031-23000041 Arabidopsis thaliana
AT3G62110 2.0kb downstream 2.0kb downstream 2000 false Chr3: 22995031-22997030 Arabidopsis thaliana
AT3G62110 5.0kb upstream 5.0kb upstream 8011 true Chr3: 22997031-23005041 Arabidopsis thaliana
AT3G62110 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23000042-23005041 Arabidopsis thaliana
AT3G62110 5.0kb downstream 5.0kb downstream 8011 true Chr3: 22992031-23000041 Arabidopsis thaliana
AT3G62110 5.0kb downstream 5.0kb downstream 5000 false Chr3: 22992031-22997030 Arabidopsis thaliana
AT3G62110 10.0kb upstream 10.0kb upstream 13011 true Chr3: 22997031-23010041 Arabidopsis thaliana
AT3G62110 10.0kb upstream 10.0kb upstream 10000 false Chr3: 23000042-23010041 Arabidopsis thaliana
AT3G62110 10.0kb downstream 10.0kb downstream 13011 true Chr3: 22987031-23000041 Arabidopsis thaliana
AT3G62110 10.0kb downstream 10.0kb downstream 10000 false Chr3: 22987031-22997030 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369639 5261 Brassicaceae View MSA
123840280 5264 Brassicales-Malvales View MSA
124337624 5266 SBM View MSA
124253369 5268 Malvidae View MSA
124067536 5270 Rosid View MSA
123744386 5271 Pentapetalae View MSA
122790869 5272 Eudicot View MSA
122045160 5273 Angiosperm View MSA
121348435 5274 Embryophyte View MSA
123380865 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.996        
cufflinks 23.08        
cufflinks 15.134        
cufflinks 17.308        
cufflinks 8.164       Low
cufflinks 25.297       High

0 Strain