Gene : AT5G03340 A. thaliana TAIR10
Defline:  (1 of 3) K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Genomic Order:  245
Name:  ? AT5G03340 Secondary Identifier:  ? PAC:19667705
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G03340 0.5kb upstream 0.5kb upstream 3781 true Chr5: 809948-813728 Arabidopsis thaliana
AT5G03340 0.5kb upstream 0.5kb upstream 500 false Chr5: 813229-813728 Arabidopsis thaliana
AT5G03340 0.5kb downstream 0.5kb downstream 3781 true Chr5: 809448-813228 Arabidopsis thaliana
AT5G03340 0.5kb downstream 0.5kb downstream 500 false Chr5: 809448-809947 Arabidopsis thaliana
AT5G03340 1.0kb upstream 1.0kb upstream 4281 true Chr5: 809948-814228 Arabidopsis thaliana
AT5G03340 1.0kb upstream 1.0kb upstream 1000 false Chr5: 813229-814228 Arabidopsis thaliana
AT5G03340 1.0kb downstream 1.0kb downstream 4281 true Chr5: 808948-813228 Arabidopsis thaliana
AT5G03340 1.0kb downstream 1.0kb downstream 1000 false Chr5: 808948-809947 Arabidopsis thaliana
AT5G03340 2.0kb upstream 2.0kb upstream 5281 true Chr5: 809948-815228 Arabidopsis thaliana
AT5G03340 2.0kb upstream 2.0kb upstream 2000 false Chr5: 813229-815228 Arabidopsis thaliana
AT5G03340 2.0kb downstream 2.0kb downstream 5281 true Chr5: 807948-813228 Arabidopsis thaliana
AT5G03340 2.0kb downstream 2.0kb downstream 2000 false Chr5: 807948-809947 Arabidopsis thaliana
AT5G03340 5.0kb upstream 5.0kb upstream 8281 true Chr5: 809948-818228 Arabidopsis thaliana
AT5G03340 5.0kb upstream 5.0kb upstream 5000 false Chr5: 813229-818228 Arabidopsis thaliana
AT5G03340 5.0kb downstream 5.0kb downstream 8281 true Chr5: 804948-813228 Arabidopsis thaliana
AT5G03340 5.0kb downstream 5.0kb downstream 5000 false Chr5: 804948-809947 Arabidopsis thaliana
AT5G03340 10.0kb upstream 10.0kb upstream 13281 true Chr5: 809948-823228 Arabidopsis thaliana
AT5G03340 10.0kb upstream 10.0kb upstream 10000 false Chr5: 813229-823228 Arabidopsis thaliana
AT5G03340 10.0kb downstream 10.0kb downstream 13281 true Chr5: 799948-813228 Arabidopsis thaliana
AT5G03340 10.0kb downstream 10.0kb downstream 10000 false Chr5: 799948-809947 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362151 5261 Brassicaceae View MSA
123838879 5264 Brassicales-Malvales View MSA
124336663 5266 SBM View MSA
124250896 5268 Malvidae View MSA
124066929 5270 Rosid View MSA
123746983 5271 Pentapetalae View MSA
122795799 5272 Eudicot View MSA
122048605 5273 Angiosperm View MSA
121347913 5274 Embryophyte View MSA
123424841 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.554        
cufflinks 14.25        
cufflinks 11.527       Low
cufflinks 17.872       High
cufflinks 13.393        
cufflinks 16.849        

0 Strain