Gene : SDN2 A. thaliana TAIR10
Primary Identifier:  ? AT5G05540 Defline:  (1 of 1) 2.7.7.78 - GDP-D-glucose phosphorylase
Genomic Order:  481 Name:  ? AT5G05540
Secondary Identifier:  ? PAC:19669643
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G05540 0.5kb upstream 0.5kb upstream 3142 true Chr5: 1635798-1638939 Arabidopsis thaliana
AT5G05540 0.5kb upstream 0.5kb upstream 500 false Chr5: 1635798-1636297 Arabidopsis thaliana
AT5G05540 0.5kb downstream 0.5kb downstream 3142 true Chr5: 1636298-1639439 Arabidopsis thaliana
AT5G05540 0.5kb downstream 0.5kb downstream 500 false Chr5: 1638940-1639439 Arabidopsis thaliana
AT5G05540 1.0kb upstream 1.0kb upstream 3642 true Chr5: 1635298-1638939 Arabidopsis thaliana
AT5G05540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 1635298-1636297 Arabidopsis thaliana
AT5G05540 1.0kb downstream 1.0kb downstream 3642 true Chr5: 1636298-1639939 Arabidopsis thaliana
AT5G05540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 1638940-1639939 Arabidopsis thaliana
AT5G05540 2.0kb upstream 2.0kb upstream 4642 true Chr5: 1634298-1638939 Arabidopsis thaliana
AT5G05540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 1634298-1636297 Arabidopsis thaliana
AT5G05540 2.0kb downstream 2.0kb downstream 4642 true Chr5: 1636298-1640939 Arabidopsis thaliana
AT5G05540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 1638940-1640939 Arabidopsis thaliana
AT5G05540 5.0kb upstream 5.0kb upstream 7642 true Chr5: 1631298-1638939 Arabidopsis thaliana
AT5G05540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 1631298-1636297 Arabidopsis thaliana
AT5G05540 5.0kb downstream 5.0kb downstream 7642 true Chr5: 1636298-1643939 Arabidopsis thaliana
AT5G05540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 1638940-1643939 Arabidopsis thaliana
AT5G05540 10.0kb upstream 10.0kb upstream 12642 true Chr5: 1626298-1638939 Arabidopsis thaliana
AT5G05540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 1626298-1636297 Arabidopsis thaliana
AT5G05540 10.0kb downstream 10.0kb downstream 12642 true Chr5: 1636298-1648939 Arabidopsis thaliana
AT5G05540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 1638940-1648939 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041485 5273 Angiosperm View MSA
122376244 5261 Brassicaceae View MSA
123838543 5264 Brassicales-Malvales View MSA
124340305 5266 SBM View MSA
124242784 5268 Malvidae View MSA
124062801 5270 Rosid View MSA
123743566 5271 Pentapetalae View MSA
122785750 5272 Eudicot View MSA
121348164 5274 Embryophyte View MSA
123427779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.815        
cufflinks 7.711       High
cufflinks 3.991        
cufflinks 7.566       High
cufflinks 3.652       Low
cufflinks 6.363        

0 Strain