Protein Family : small RNA degrading nuclease 3 123838543

Method ID:  5264 Method Name:  Brassicales-Malvales
Sequence Alignment:  View MSA Member Count:  23

23 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
AT5G05540 (1 of 1) 2.7.7.78 - GDP-D-glucose phosphorylase A. thaliana TAIR10 SDN2 2642   Chr5: 1636298-1638939
AT5G67240 (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) A. thaliana TAIR10 SDN3 3936   Chr5: 26824236-26828171
AT3G50100 (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) A. thaliana TAIR10 SDN1 2242   Chr3: 18578353-18580594
Thhalv10024938m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 2587   scaffold_1: 3670817-3673403
Thhalv10011012m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 2612   scaffold_16: 2599959-2602570
Thhalv10003942m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 3637   scaffold_6: 466091-469727
Gorai.003G066000 (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED G. raimondii v2.1 4450   Chr03: 13306911-13311360
Thecc1EG000687 (1 of 1) PTHR12801//PTHR12801:SF69 - EXONUCLEASE // RNA EXONUCLEASE NEF-SP-RELATED T. cacao v1.1 5843   scaffold_1: 3012436-3018278
Araha.2717s0003 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED A. halleri v1.1 5804   Scaffold2717: 18800-24603
Araha.4260s0005 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED A. halleri v1.1 4026   Scaffold4260: 19146-23171
Araha.13672s0010 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED A. halleri v1.1 2597   Scaffold13672: 47181-49777
Cagra.0342s0010 (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED C. grandiflora v1.1 6048   Scaffold342: 30335-36382
Cagra.1504s0055 (1 of 1) 2.7.7.78//3.1.13.1 - Exoribonuclease II / Ribonuclease II C. grandiflora v1.1 2370   Scaffold1504: 177240-179609
Cagra.1549s0001 (1 of 1) PF00076//PF00929 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Exonuclease (RNase_T) C. grandiflora v1.1 2356   Scaffold1549: 1-2356
Brara.I03377 (1 of 1) PF00076//PF00929 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Exonuclease (RNase_T) B. rapa FPsc v1.3 2452   A09: 32056877-32059328
Bostr.0568s0146 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED B. stricta v1.2 3682   Scaffold568: 659408-663089
Bostr.6864s0232 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED B. stricta v1.2 2488   Scaffold6864: 1142549-1145036
AL5G30220 (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) A. lyrata v2.1 2237   scaffold_5: 14953203-14955439
AL6G15430 (1 of 1) 2.7.7.78 - GDP-D-glucose phosphorylase A. lyrata v2.1 2495   scaffold_6: 2013251-2015745
AL8G44100 (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) A. lyrata v2.1 3892   scaffold_8: 22407655-22411546
Carub.0005s1644 (1 of 1) PF00076//PF00929 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Exonuclease (RNase_T) C. rubella v1.1 6548   scaffold_5: 8663250-8669797
Carub.0006s0444 (1 of 4) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) C. rubella v1.1 2519   scaffold_6: 1612467-1614985
Carub.0008s2727 (1 of 4) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) C. rubella v1.1 3709   scaffold_8: 12892825-12896533

23 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
AT5G05540.1 A. thaliana TAIR10 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Thhalv10003942m E. salsugineum v1.0 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Thhalv10011012m E. salsugineum v1.0 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Bostr.0568s0146.1.p B. stricta v1.2 123838543 small RNA degrading nuclease 3 2 5264 Brassicales-Malvales
Carub.0005s1644.1.p C. rubella v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
AT3G50100.1 A. thaliana TAIR10 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
AT5G67240.1 A. thaliana TAIR10 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Thhalv10024938m E. salsugineum v1.0 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Gorai.003G066000.1 G. raimondii v2.1 123838543 small RNA degrading nuclease 3 1 5264 Brassicales-Malvales
Thecc1EG000687t2 T. cacao v1.1 123838543 small RNA degrading nuclease 3 1 5264 Brassicales-Malvales
Araha.4260s0005.1.p A. halleri v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Araha.13672s0010.1.p A. halleri v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Araha.2717s0003.1.p A. halleri v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Cagra.1504s0055.1.p C. grandiflora v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Cagra.0342s0010.1.p C. grandiflora v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Cagra.1549s0001.1.p C. grandiflora v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Brara.I03377.1.p B. rapa FPsc v1.3 123838543 small RNA degrading nuclease 3 1 5264 Brassicales-Malvales
Bostr.6864s0232.1.p B. stricta v1.2 123838543 small RNA degrading nuclease 3 2 5264 Brassicales-Malvales
AL5G30220.t1 A. lyrata v2.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
AL8G44100.t1 A. lyrata v2.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
AL6G15430.t1 A. lyrata v2.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Carub.0006s0444.1.p C. rubella v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales
Carub.0008s2727.1.p C. rubella v1.1 123838543 small RNA degrading nuclease 3 3 5264 Brassicales-Malvales