Gene : SDN1 A. thaliana TAIR10
Primary Identifier:  ? AT3G50100 Defline:  (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70)
Genomic Order:  4016 Name:  ? AT3G50100
Secondary Identifier:  ? PAC:19664573
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50100 0.5kb upstream 0.5kb upstream 2742 true Chr3: 18577853-18580594 Arabidopsis thaliana
AT3G50100 0.5kb upstream 0.5kb upstream 500 false Chr3: 18577853-18578352 Arabidopsis thaliana
AT3G50100 0.5kb downstream 0.5kb downstream 2742 true Chr3: 18578353-18581094 Arabidopsis thaliana
AT3G50100 0.5kb downstream 0.5kb downstream 500 false Chr3: 18580595-18581094 Arabidopsis thaliana
AT3G50100 1.0kb upstream 1.0kb upstream 3242 true Chr3: 18577353-18580594 Arabidopsis thaliana
AT3G50100 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18577353-18578352 Arabidopsis thaliana
AT3G50100 1.0kb downstream 1.0kb downstream 3242 true Chr3: 18578353-18581594 Arabidopsis thaliana
AT3G50100 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18580595-18581594 Arabidopsis thaliana
AT3G50100 2.0kb upstream 2.0kb upstream 4242 true Chr3: 18576353-18580594 Arabidopsis thaliana
AT3G50100 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18576353-18578352 Arabidopsis thaliana
AT3G50100 2.0kb downstream 2.0kb downstream 4242 true Chr3: 18578353-18582594 Arabidopsis thaliana
AT3G50100 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18580595-18582594 Arabidopsis thaliana
AT3G50100 5.0kb upstream 5.0kb upstream 7242 true Chr3: 18573353-18580594 Arabidopsis thaliana
AT3G50100 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18573353-18578352 Arabidopsis thaliana
AT3G50100 5.0kb downstream 5.0kb downstream 7242 true Chr3: 18578353-18585594 Arabidopsis thaliana
AT3G50100 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18580595-18585594 Arabidopsis thaliana
AT3G50100 10.0kb upstream 10.0kb upstream 12242 true Chr3: 18568353-18580594 Arabidopsis thaliana
AT3G50100 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18568353-18578352 Arabidopsis thaliana
AT3G50100 10.0kb downstream 10.0kb downstream 12242 true Chr3: 18578353-18590594 Arabidopsis thaliana
AT3G50100 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18580595-18590594 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041485 5273 Angiosperm View MSA
122365867 5261 Brassicaceae View MSA
123838543 5264 Brassicales-Malvales View MSA
124340305 5266 SBM View MSA
124242784 5268 Malvidae View MSA
124062801 5270 Rosid View MSA
123743566 5271 Pentapetalae View MSA
122785750 5272 Eudicot View MSA
121348164 5274 Embryophyte View MSA
123427779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.755        
cufflinks 5.908        
cufflinks 2.084       Low
cufflinks 5.956        
cufflinks 1.926       Low
cufflinks 6.131        

0 Strain