Protein Family : small RNA degrading nuclease 3 123427779

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  100

100 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29970.t000007 (1 of 1) PTHR12801//PTHR12801:SF69 - EXONUCLEASE // RNA EXONUCLEASE NEF-SP-RELATED R. communis v0.1 3911   29970: 59590-63500
Cucsa.102660 (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED C. sativus v1.0 5162   scaffold00927: 1639742-1644903
orange1.1g010743m.g (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED C. sinensis v1.1 6182   scaffold00006: 1300089-1306270
AT5G05540 (1 of 1) 2.7.7.78 - GDP-D-glucose phosphorylase A. thaliana TAIR10 SDN2 2642   Chr5: 1636298-1638939
AT5G67240 (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) A. thaliana TAIR10 SDN3 3936   Chr5: 26824236-26828171
AT3G50100 (1 of 5) K14570 - RNA exonuclease 1 (REX1, REXO1, RNH70) A. thaliana TAIR10 SDN1 2242   Chr3: 18578353-18580594
Thhalv10024938m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 2587   scaffold_1: 3670817-3673403
Thhalv10010950m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 2324   scaffold_16: 2596513-2598836
Thhalv10011012m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 2612   scaffold_16: 2599959-2602570
Thhalv10003942m.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED E. salsugineum v1.0 3637   scaffold_6: 466091-469727
Ciclev10025436m.g (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED C. clementina v1.0 6227   scaffold_7: 3586917-3593143
Lus10011504.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED L. usitatissimum v1.0 3517   scaffold260: 10834-14350
Lus10011505.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED L. usitatissimum v1.0 2439   scaffold260: 14971-17409
Lus10019321.g (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED L. usitatissimum v1.0 3401   scaffold377: 536823-540223
Gorai.003G066000 (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED G. raimondii v2.1 4450   Chr03: 13306911-13311360
fgenesh1_pg_4_num_412 (1 of 2) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED C. subellipsoidea C-169 v2.0 2506   scaffold_4: 2756504-2759009
estExt_Genewise1.C_5_t20255 (1 of 1) PF00929//PF02037 - Exonuclease (RNase_T) // SAP domain (SAP) M. pusilla CCMP1545 v3.0 2020   scaffold_5: 836239-838258
MicpuC2.estExt_fgenesh1_pg.C_110227 (1 of 1) PTHR12801:SF68 - RNA EXONUCLEASE 1 M. pusilla CCMP1545 v3.0 2524   scaffold_11: 823999-826522
EuGene.0400010431 (1 of 1) KOG2248 - 3'-5' exonuclease M. sp RCC299 v3.0 2652   Chr_04: 875693-878344
eugene.0800010169 (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED O. lucimarinus v2.0 1574   Chr_8: 299180-300753
Thecc1EG000687 (1 of 1) PTHR12801//PTHR12801:SF69 - EXONUCLEASE // RNA EXONUCLEASE NEF-SP-RELATED T. cacao v1.1 5843   scaffold_1: 3012436-3018278
Migut.H00401 (1 of 1) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED M. guttatus v2.0 3354   scaffold_8: 2456337-2459690
Araha.2717s0003 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED A. halleri v1.1 5804   Scaffold2717: 18800-24603
Araha.4260s0005 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED A. halleri v1.1 4026   Scaffold4260: 19146-23171
Araha.13672s0010 (1 of 3) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED A. halleri v1.1 2597   Scaffold13672: 47181-49777
Cagra.0342s0010 (1 of 4) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED C. grandiflora v1.1 6048   Scaffold342: 30335-36382
Cagra.1504s0055 (1 of 1) 2.7.7.78//3.1.13.1 - Exoribonuclease II / Ribonuclease II C. grandiflora v1.1 2370   Scaffold1504: 177240-179609
Cagra.1549s0001 (1 of 1) PF00076//PF00929 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Exonuclease (RNase_T) C. grandiflora v1.1 2356   Scaffold1549: 1-2356
Glyma.10G069900 (1 of 2) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED G. max Wm82.a2.v1 4463   Chr10: 6891105-6895567
Glyma.17G167900 (1 of 2) PTHR12801:SF69 - RNA EXONUCLEASE NEF-SP-RELATED G. max Wm82.a2.v1 12433   Chr17: 15517850-15530282

100 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29970.m000978 R. communis v0.1 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
Cucsa.102660.1 C. sativus v1.0 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
orange1.1g010743m C. sinensis v1.1 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
AT5G05540.1 A. thaliana TAIR10 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
AT5G67240.1 A. thaliana TAIR10 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
AT3G50100.1 A. thaliana TAIR10 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Thhalv10024938m E. salsugineum v1.0 123427779 small RNA degrading nuclease 3 4 5275 Viridiplantae
Thhalv10010950m E. salsugineum v1.0 123427779 small RNA degrading nuclease 3 4 5275 Viridiplantae
Thhalv10011012m E. salsugineum v1.0 123427779 small RNA degrading nuclease 3 4 5275 Viridiplantae
Thhalv10003942m E. salsugineum v1.0 123427779 small RNA degrading nuclease 3 4 5275 Viridiplantae
Ciclev10025436m C. clementina v1.0 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
Lus10011504 L. usitatissimum v1.0 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Lus10011505 L. usitatissimum v1.0 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Lus10019321 L. usitatissimum v1.0 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Gorai.003G066000.1 G. raimondii v2.1 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
40763 C. subellipsoidea C-169 v2.0 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
48467 M. pusilla CCMP1545 v3.0 123427779 small RNA degrading nuclease 3 2 5275 Viridiplantae
169972 M. pusilla CCMP1545 v3.0 123427779 small RNA degrading nuclease 3 2 5275 Viridiplantae
57902 M. sp RCC299 v3.0 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
33043 O. lucimarinus v2.0 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
Thecc1EG000687t2 T. cacao v1.1 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
Migut.H00401.1.p M. guttatus v2.0 123427779 small RNA degrading nuclease 3 1 5275 Viridiplantae
Araha.2717s0003.1.p A. halleri v1.1 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Araha.4260s0005.1.p A. halleri v1.1 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Araha.13672s0010.1.p A. halleri v1.1 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Cagra.1504s0055.1.p C. grandiflora v1.1 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Cagra.1549s0001.1.p C. grandiflora v1.1 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Cagra.0342s0010.1.p C. grandiflora v1.1 123427779 small RNA degrading nuclease 3 3 5275 Viridiplantae
Glyma.10G069900.1.p G. max Wm82.a2.v1 123427779 small RNA degrading nuclease 3 2 5275 Viridiplantae
Glyma.17G167900.1.p G. max Wm82.a2.v1 123427779 small RNA degrading nuclease 3 2 5275 Viridiplantae