Gene : AT5G25520 A. thaliana TAIR10
Defline:  (1 of 1) KOG1634 - Predicted transcription factor DATF1, contains PHD and TFS2M domains Genomic Order:  2447
Name:  ? AT5G25520 Secondary Identifier:  ? PAC:19667715
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G25520 0.5kb upstream 0.5kb upstream 5033 true Chr5: 8884588-8889620 Arabidopsis thaliana
AT5G25520 0.5kb upstream 0.5kb upstream 500 false Chr5: 8884588-8885087 Arabidopsis thaliana
AT5G25520 0.5kb downstream 0.5kb downstream 5033 true Chr5: 8885088-8890120 Arabidopsis thaliana
AT5G25520 0.5kb downstream 0.5kb downstream 500 false Chr5: 8889621-8890120 Arabidopsis thaliana
AT5G25520 1.0kb upstream 1.0kb upstream 5533 true Chr5: 8884088-8889620 Arabidopsis thaliana
AT5G25520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8884088-8885087 Arabidopsis thaliana
AT5G25520 1.0kb downstream 1.0kb downstream 5533 true Chr5: 8885088-8890620 Arabidopsis thaliana
AT5G25520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8889621-8890620 Arabidopsis thaliana
AT5G25520 2.0kb upstream 2.0kb upstream 6533 true Chr5: 8883088-8889620 Arabidopsis thaliana
AT5G25520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8883088-8885087 Arabidopsis thaliana
AT5G25520 2.0kb downstream 2.0kb downstream 6533 true Chr5: 8885088-8891620 Arabidopsis thaliana
AT5G25520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8889621-8891620 Arabidopsis thaliana
AT5G25520 5.0kb upstream 5.0kb upstream 9533 true Chr5: 8880088-8889620 Arabidopsis thaliana
AT5G25520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8880088-8885087 Arabidopsis thaliana
AT5G25520 5.0kb downstream 5.0kb downstream 9533 true Chr5: 8885088-8894620 Arabidopsis thaliana
AT5G25520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8889621-8894620 Arabidopsis thaliana
AT5G25520 10.0kb upstream 10.0kb upstream 14533 true Chr5: 8875088-8889620 Arabidopsis thaliana
AT5G25520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8875088-8885087 Arabidopsis thaliana
AT5G25520 10.0kb downstream 10.0kb downstream 14533 true Chr5: 8885088-8899620 Arabidopsis thaliana
AT5G25520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8889621-8899620 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368731 5261 Brassicaceae View MSA
123838705 5264 Brassicales-Malvales View MSA
124341937 5266 SBM View MSA
124240865 5268 Malvidae View MSA
124063305 5270 Rosid View MSA
123742166 5271 Pentapetalae View MSA
122788030 5272 Eudicot View MSA
122051575 5273 Angiosperm View MSA
121345447 5274 Embryophyte View MSA
123423935 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.385        
cufflinks 7.517        
cufflinks 6.911        
cufflinks 7.725        
cufflinks 5.839       Low
cufflinks 6.851        

0 Strain