Gene : emb1644 A. thaliana TAIR10
Primary Identifier:  ? AT5G27720 Defline:  (1 of 1) K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4)
Genomic Order:  2648 Name:  ? AT5G27720
Secondary Identifier:  ? PAC:19667592
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27720 0.5kb upstream 0.5kb upstream 2544 true Chr5: 9815056-9817599 Arabidopsis thaliana
AT5G27720 0.5kb upstream 0.5kb upstream 500 false Chr5: 9815056-9815555 Arabidopsis thaliana
AT5G27720 0.5kb downstream 0.5kb downstream 2544 true Chr5: 9815556-9818099 Arabidopsis thaliana
AT5G27720 0.5kb downstream 0.5kb downstream 500 false Chr5: 9817600-9818099 Arabidopsis thaliana
AT5G27720 1.0kb upstream 1.0kb upstream 3044 true Chr5: 9814556-9817599 Arabidopsis thaliana
AT5G27720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9814556-9815555 Arabidopsis thaliana
AT5G27720 1.0kb downstream 1.0kb downstream 3044 true Chr5: 9815556-9818599 Arabidopsis thaliana
AT5G27720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9817600-9818599 Arabidopsis thaliana
AT5G27720 2.0kb upstream 2.0kb upstream 4044 true Chr5: 9813556-9817599 Arabidopsis thaliana
AT5G27720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9813556-9815555 Arabidopsis thaliana
AT5G27720 2.0kb downstream 2.0kb downstream 4044 true Chr5: 9815556-9819599 Arabidopsis thaliana
AT5G27720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9817600-9819599 Arabidopsis thaliana
AT5G27720 5.0kb upstream 5.0kb upstream 7044 true Chr5: 9810556-9817599 Arabidopsis thaliana
AT5G27720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9810556-9815555 Arabidopsis thaliana
AT5G27720 5.0kb downstream 5.0kb downstream 7044 true Chr5: 9815556-9822599 Arabidopsis thaliana
AT5G27720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9817600-9822599 Arabidopsis thaliana
AT5G27720 10.0kb upstream 10.0kb upstream 12044 true Chr5: 9805556-9817599 Arabidopsis thaliana
AT5G27720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9805556-9815555 Arabidopsis thaliana
AT5G27720 10.0kb downstream 10.0kb downstream 12044 true Chr5: 9815556-9827599 Arabidopsis thaliana
AT5G27720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9817600-9827599 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369634 5261 Brassicaceae View MSA
123832416 5264 Brassicales-Malvales View MSA
124350381 5266 SBM View MSA
124247963 5268 Malvidae View MSA
124074135 5270 Rosid View MSA
123737772 5271 Pentapetalae View MSA
122793986 5272 Eudicot View MSA
122047121 5273 Angiosperm View MSA
121348903 5274 Embryophyte View MSA
123424585 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.562       High
cufflinks 19.675        
cufflinks 17.599       Low
cufflinks 20.07        
cufflinks 18.769        
cufflinks 21.519       High

0 Strain