Gene : AT1G01080 A. thaliana TAIR10
Defline:  (1 of 1) KOG0131//KOG0146 - Splicing factor 3b, subunit 4 // RNA-binding protein ETR-3 (RRM superfamily) Genomic Order:  9
Name:  ? AT1G01080 Secondary Identifier:  ? PAC:19651135
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G01080 0.5kb upstream 0.5kb upstream 2224 true Chr1: 45296-47519 Arabidopsis thaliana
AT1G01080 0.5kb upstream 0.5kb upstream 500 false Chr1: 47020-47519 Arabidopsis thaliana
AT1G01080 0.5kb downstream 0.5kb downstream 2224 true Chr1: 44796-47019 Arabidopsis thaliana
AT1G01080 0.5kb downstream 0.5kb downstream 500 false Chr1: 44796-45295 Arabidopsis thaliana
AT1G01080 1.0kb upstream 1.0kb upstream 2724 true Chr1: 45296-48019 Arabidopsis thaliana
AT1G01080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 47020-48019 Arabidopsis thaliana
AT1G01080 1.0kb downstream 1.0kb downstream 2724 true Chr1: 44296-47019 Arabidopsis thaliana
AT1G01080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 44296-45295 Arabidopsis thaliana
AT1G01080 2.0kb upstream 2.0kb upstream 3724 true Chr1: 45296-49019 Arabidopsis thaliana
AT1G01080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 47020-49019 Arabidopsis thaliana
AT1G01080 2.0kb downstream 2.0kb downstream 3724 true Chr1: 43296-47019 Arabidopsis thaliana
AT1G01080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 43296-45295 Arabidopsis thaliana
AT1G01080 5.0kb upstream 5.0kb upstream 6724 true Chr1: 45296-52019 Arabidopsis thaliana
AT1G01080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 47020-52019 Arabidopsis thaliana
AT1G01080 5.0kb downstream 5.0kb downstream 6724 true Chr1: 40296-47019 Arabidopsis thaliana
AT1G01080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 40296-45295 Arabidopsis thaliana
AT1G01080 10.0kb upstream 10.0kb upstream 11724 true Chr1: 45296-57019 Arabidopsis thaliana
AT1G01080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 47020-57019 Arabidopsis thaliana
AT1G01080 10.0kb downstream 10.0kb downstream 11724 true Chr1: 35296-47019 Arabidopsis thaliana
AT1G01080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 35296-45295 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374600 5261 Brassicaceae View MSA
123800788 5264 Brassicales-Malvales View MSA
124346119 5266 SBM View MSA
124244396 5268 Malvidae View MSA
124069187 5270 Rosid View MSA
123741814 5271 Pentapetalae View MSA
122770132 5272 Eudicot View MSA
122046053 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310543 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.959        
cufflinks 3.206        
cufflinks 32.604     High High
cufflinks 2.595        
cufflinks 21.893        
cufflinks 2.657        

0 Strain