Gene : Bradi1g43590 B. distachyon v3.1
Defline:  (1 of 1) K17586 - PHD and RING finger domain-containing protein 1 (PHRF1) Genomic Order:  5362
Name:  ? Bradi1g43590 Secondary Identifier:  ? PAC:32805993
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g43590 0.5kb upstream 0.5kb upstream 6180 true Bd1: 41543822-41550001 Brachypodium distachyon
Bradi1g43590 0.5kb upstream 0.5kb upstream 500 false Bd1: 41549502-41550001 Brachypodium distachyon
Bradi1g43590 0.5kb downstream 0.5kb downstream 6180 true Bd1: 41543322-41549501 Brachypodium distachyon
Bradi1g43590 0.5kb downstream 0.5kb downstream 500 false Bd1: 41543322-41543821 Brachypodium distachyon
Bradi1g43590 1.0kb upstream 1.0kb upstream 6680 true Bd1: 41543822-41550501 Brachypodium distachyon
Bradi1g43590 1.0kb upstream 1.0kb upstream 1000 false Bd1: 41549502-41550501 Brachypodium distachyon
Bradi1g43590 1.0kb downstream 1.0kb downstream 6680 true Bd1: 41542822-41549501 Brachypodium distachyon
Bradi1g43590 1.0kb downstream 1.0kb downstream 1000 false Bd1: 41542822-41543821 Brachypodium distachyon
Bradi1g43590 2.0kb upstream 2.0kb upstream 7680 true Bd1: 41543822-41551501 Brachypodium distachyon
Bradi1g43590 2.0kb upstream 2.0kb upstream 2000 false Bd1: 41549502-41551501 Brachypodium distachyon
Bradi1g43590 2.0kb downstream 2.0kb downstream 7680 true Bd1: 41541822-41549501 Brachypodium distachyon
Bradi1g43590 2.0kb downstream 2.0kb downstream 2000 false Bd1: 41541822-41543821 Brachypodium distachyon
Bradi1g43590 5.0kb upstream 5.0kb upstream 10680 true Bd1: 41543822-41554501 Brachypodium distachyon
Bradi1g43590 5.0kb upstream 5.0kb upstream 5000 false Bd1: 41549502-41554501 Brachypodium distachyon
Bradi1g43590 5.0kb downstream 5.0kb downstream 10680 true Bd1: 41538822-41549501 Brachypodium distachyon
Bradi1g43590 5.0kb downstream 5.0kb downstream 5000 false Bd1: 41538822-41543821 Brachypodium distachyon
Bradi1g43590 10.0kb upstream 10.0kb upstream 15680 true Bd1: 41543822-41559501 Brachypodium distachyon
Bradi1g43590 10.0kb upstream 10.0kb upstream 10000 false Bd1: 41549502-41559501 Brachypodium distachyon
Bradi1g43590 10.0kb downstream 10.0kb downstream 15680 true Bd1: 41533822-41549501 Brachypodium distachyon
Bradi1g43590 10.0kb downstream 10.0kb downstream 10000 false Bd1: 41533822-41543821 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572112 5269 Grass View MSA
122048494 5273 Angiosperm View MSA
121349825 5274 Embryophyte View MSA
123426689 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.288       Low
cufflinks 0.939        
cufflinks 1.751       High
cufflinks 0.838        
cufflinks 0.501       Low
cufflinks 0.74        
cufflinks 0.795        
cufflinks 0.794        
cufflinks 0.766        
cufflinks 1.407        
cufflinks 2.36       High
cufflinks 1.007        
cufflinks 1.156        
cufflinks 1.357        
cufflinks 0.801        
cufflinks 0.922        
cufflinks 0.527       Low
cufflinks 0.732        
cufflinks 1.161        
cufflinks 0.672        
cufflinks 0.85        
cufflinks 1.89       High
cufflinks 0.705        
cufflinks 0.679        
cufflinks 0.72        
cufflinks 1.864       High
cufflinks 1.335        
cufflinks 1.985       High
cufflinks 1.904       High
cufflinks 0.781        

0 Strain