Gene : Thhalv10027030m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR31375:SF11 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2223
Name:  ? Thhalv10027030m.g Secondary Identifier:  ? PAC:20193506
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-1081 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10027030m.g 0.5kb upstream 0.5kb upstream 2555 true scaffold_1: 9587201-9589755 Eutrema salsugineum
Thhalv10027030m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 9589256-9589755 Eutrema salsugineum
Thhalv10027030m.g 0.5kb downstream 0.5kb downstream 2555 true scaffold_1: 9586701-9589255 Eutrema salsugineum
Thhalv10027030m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 9586701-9587200 Eutrema salsugineum
Thhalv10027030m.g 1.0kb upstream 1.0kb upstream 3055 true scaffold_1: 9587201-9590255 Eutrema salsugineum
Thhalv10027030m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 9589256-9590255 Eutrema salsugineum
Thhalv10027030m.g 1.0kb downstream 1.0kb downstream 3055 true scaffold_1: 9586201-9589255 Eutrema salsugineum
Thhalv10027030m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 9586201-9587200 Eutrema salsugineum
Thhalv10027030m.g 2.0kb upstream 2.0kb upstream 4055 true scaffold_1: 9587201-9591255 Eutrema salsugineum
Thhalv10027030m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 9589256-9591255 Eutrema salsugineum
Thhalv10027030m.g 2.0kb downstream 2.0kb downstream 4055 true scaffold_1: 9585201-9589255 Eutrema salsugineum
Thhalv10027030m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 9585201-9587200 Eutrema salsugineum
Thhalv10027030m.g 5.0kb upstream 5.0kb upstream 7055 true scaffold_1: 9587201-9594255 Eutrema salsugineum
Thhalv10027030m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 9589256-9594255 Eutrema salsugineum
Thhalv10027030m.g 5.0kb downstream 5.0kb downstream 7055 true scaffold_1: 9582201-9589255 Eutrema salsugineum
Thhalv10027030m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 9582201-9587200 Eutrema salsugineum
Thhalv10027030m.g 10.0kb upstream 10.0kb upstream 12055 true scaffold_1: 9587201-9599255 Eutrema salsugineum
Thhalv10027030m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 9589256-9599255 Eutrema salsugineum
Thhalv10027030m.g 10.0kb downstream 10.0kb downstream 12055 true scaffold_1: 9577201-9589255 Eutrema salsugineum
Thhalv10027030m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 9577201-9587200 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361065 5261 Brassicaceae View MSA
123831116 5264 Brassicales-Malvales View MSA
124321711 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain