Gene : Thhalv10029155m.g E. salsugineum v1.0
Defline:  (1 of 17) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  789
Name:  ? Thhalv10029155m.g Secondary Identifier:  ? PAC:20197701
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10029155m.g 0.5kb upstream 0.5kb upstream 1400 true scaffold_3: 6727859-6729258 Eutrema salsugineum
Thhalv10029155m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6728759-6729258 Eutrema salsugineum
Thhalv10029155m.g 0.5kb downstream 0.5kb downstream 1400 true scaffold_3: 6727359-6728758 Eutrema salsugineum
Thhalv10029155m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6727359-6727858 Eutrema salsugineum
Thhalv10029155m.g 1.0kb upstream 1.0kb upstream 1900 true scaffold_3: 6727859-6729758 Eutrema salsugineum
Thhalv10029155m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6728759-6729758 Eutrema salsugineum
Thhalv10029155m.g 1.0kb downstream 1.0kb downstream 1900 true scaffold_3: 6726859-6728758 Eutrema salsugineum
Thhalv10029155m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6726859-6727858 Eutrema salsugineum
Thhalv10029155m.g 2.0kb upstream 2.0kb upstream 2900 true scaffold_3: 6727859-6730758 Eutrema salsugineum
Thhalv10029155m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6728759-6730758 Eutrema salsugineum
Thhalv10029155m.g 2.0kb downstream 2.0kb downstream 2900 true scaffold_3: 6725859-6728758 Eutrema salsugineum
Thhalv10029155m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6725859-6727858 Eutrema salsugineum
Thhalv10029155m.g 5.0kb upstream 5.0kb upstream 5900 true scaffold_3: 6727859-6733758 Eutrema salsugineum
Thhalv10029155m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6728759-6733758 Eutrema salsugineum
Thhalv10029155m.g 5.0kb downstream 5.0kb downstream 5900 true scaffold_3: 6722859-6728758 Eutrema salsugineum
Thhalv10029155m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6722859-6727858 Eutrema salsugineum
Thhalv10029155m.g 10.0kb upstream 10.0kb upstream 10900 true scaffold_3: 6727859-6738758 Eutrema salsugineum
Thhalv10029155m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6728759-6738758 Eutrema salsugineum
Thhalv10029155m.g 10.0kb downstream 10.0kb downstream 10900 true scaffold_3: 6717859-6728758 Eutrema salsugineum
Thhalv10029155m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6717859-6727858 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122358354 5261 Brassicaceae Singleton cluster - no MSA
123796324 5264 Brassicales-Malvales Singleton cluster - no MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain