Gene : AL1G12160 A. lyrata v2.1

Defline:  (1 of 1) K01213 - galacturan 1,4-alpha-galacturonidase (E3.2.1.67) Genomic Order:  205
Name:  ? AL1G12160 Secondary Identifier:  ? PAC:35934766

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G12160 0.5kb upstream 0.5kb upstream 2355   true scaffold_1: 746870-749224 Arabidopsis lyrata
AL1G12160 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 748725-749224 Arabidopsis lyrata
AL1G12160 0.5kb downstream 0.5kb downstream 2355   true scaffold_1: 746370-748724 Arabidopsis lyrata
AL1G12160 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 746370-746869 Arabidopsis lyrata
AL1G12160 1.0kb upstream 1.0kb upstream 2855   true scaffold_1: 746870-749724 Arabidopsis lyrata
AL1G12160 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 748725-749724 Arabidopsis lyrata
AL1G12160 1.0kb downstream 1.0kb downstream 2855   true scaffold_1: 745870-748724 Arabidopsis lyrata
AL1G12160 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 745870-746869 Arabidopsis lyrata
AL1G12160 2.0kb upstream 2.0kb upstream 3855   true scaffold_1: 746870-750724 Arabidopsis lyrata
AL1G12160 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 748725-750724 Arabidopsis lyrata
AL1G12160 2.0kb downstream 2.0kb downstream 3855   true scaffold_1: 744870-748724 Arabidopsis lyrata
AL1G12160 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 744870-746869 Arabidopsis lyrata
AL1G12160 5.0kb upstream 5.0kb upstream 6855   true scaffold_1: 746870-753724 Arabidopsis lyrata
AL1G12160 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 748725-753724 Arabidopsis lyrata
AL1G12160 5.0kb downstream 5.0kb downstream 6855   true scaffold_1: 741870-748724 Arabidopsis lyrata
AL1G12160 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 741870-746869 Arabidopsis lyrata
AL1G12160 10.0kb upstream 10.0kb upstream 11855   true scaffold_1: 746870-758724 Arabidopsis lyrata
AL1G12160 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 748725-758724 Arabidopsis lyrata
AL1G12160 10.0kb downstream 10.0kb downstream 11855   true scaffold_1: 736870-748724 Arabidopsis lyrata
AL1G12160 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 736870-746869 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369949 5261 Brassicaceae View MSA
123837195 5264 Brassicales-Malvales View MSA
124351159 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain