Gene : Solyc09g008040.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Description:  RNA polymerase sigma-70 factor (AHRD V1 ***- D7LJA3_ARALY); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid
Genomic Order:  205 Name:  ? Solyc09g008040.2
Secondary Identifier:  ? PAC:36131505
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc09g008040.2 0.5kb upstream 0.5kb upstream 6967 true SL2.50ch09: 1507519-1514485 Solanum lycopersicum
Solyc09g008040.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch09: 1507519-1508018 Solanum lycopersicum
Solyc09g008040.2 0.5kb downstream 0.5kb downstream 6967 true SL2.50ch09: 1508019-1514985 Solanum lycopersicum
Solyc09g008040.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch09: 1514486-1514985 Solanum lycopersicum
Solyc09g008040.2 1.0kb upstream 1.0kb upstream 7467 true SL2.50ch09: 1507019-1514485 Solanum lycopersicum
Solyc09g008040.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch09: 1507019-1508018 Solanum lycopersicum
Solyc09g008040.2 1.0kb downstream 1.0kb downstream 7467 true SL2.50ch09: 1508019-1515485 Solanum lycopersicum
Solyc09g008040.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch09: 1514486-1515485 Solanum lycopersicum
Solyc09g008040.2 2.0kb upstream 2.0kb upstream 8467 true SL2.50ch09: 1506019-1514485 Solanum lycopersicum
Solyc09g008040.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch09: 1506019-1508018 Solanum lycopersicum
Solyc09g008040.2 2.0kb downstream 2.0kb downstream 8467 true SL2.50ch09: 1508019-1516485 Solanum lycopersicum
Solyc09g008040.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch09: 1514486-1516485 Solanum lycopersicum
Solyc09g008040.2 5.0kb upstream 5.0kb upstream 11467 true SL2.50ch09: 1503019-1514485 Solanum lycopersicum
Solyc09g008040.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch09: 1503019-1508018 Solanum lycopersicum
Solyc09g008040.2 5.0kb downstream 5.0kb downstream 11467 true SL2.50ch09: 1508019-1519485 Solanum lycopersicum
Solyc09g008040.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch09: 1514486-1519485 Solanum lycopersicum
Solyc09g008040.2 10.0kb upstream 10.0kb upstream 16467 true SL2.50ch09: 1498019-1514485 Solanum lycopersicum
Solyc09g008040.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch09: 1498019-1508018 Solanum lycopersicum
Solyc09g008040.2 10.0kb downstream 10.0kb downstream 16467 true SL2.50ch09: 1508019-1524485 Solanum lycopersicum
Solyc09g008040.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch09: 1514486-1524485 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467649 5263 Asterids View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain