Gene : Solyc11g044340.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED Description:  Pre-mRNA-processing factor 40 homolog A (AHRD V1 **-- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain
Genomic Order:  1388 Name:  ? Solyc11g044340.1
Secondary Identifier:  ? PAC:36153502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g044340.1 0.5kb upstream 0.5kb upstream 10819 true SL2.50ch11: 32939090-32949908 Solanum lycopersicum
Solyc11g044340.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 32939090-32939589 Solanum lycopersicum
Solyc11g044340.1 0.5kb downstream 0.5kb downstream 10819 true SL2.50ch11: 32939590-32950408 Solanum lycopersicum
Solyc11g044340.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 32949909-32950408 Solanum lycopersicum
Solyc11g044340.1 1.0kb upstream 1.0kb upstream 11319 true SL2.50ch11: 32938590-32949908 Solanum lycopersicum
Solyc11g044340.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 32938590-32939589 Solanum lycopersicum
Solyc11g044340.1 1.0kb downstream 1.0kb downstream 11319 true SL2.50ch11: 32939590-32950908 Solanum lycopersicum
Solyc11g044340.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 32949909-32950908 Solanum lycopersicum
Solyc11g044340.1 2.0kb upstream 2.0kb upstream 12319 true SL2.50ch11: 32937590-32949908 Solanum lycopersicum
Solyc11g044340.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 32937590-32939589 Solanum lycopersicum
Solyc11g044340.1 2.0kb downstream 2.0kb downstream 12319 true SL2.50ch11: 32939590-32951908 Solanum lycopersicum
Solyc11g044340.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 32949909-32951908 Solanum lycopersicum
Solyc11g044340.1 5.0kb upstream 5.0kb upstream 15319 true SL2.50ch11: 32934590-32949908 Solanum lycopersicum
Solyc11g044340.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 32934590-32939589 Solanum lycopersicum
Solyc11g044340.1 5.0kb downstream 5.0kb downstream 15319 true SL2.50ch11: 32939590-32954908 Solanum lycopersicum
Solyc11g044340.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 32949909-32954908 Solanum lycopersicum
Solyc11g044340.1 10.0kb upstream 10.0kb upstream 20319 true SL2.50ch11: 32929590-32949908 Solanum lycopersicum
Solyc11g044340.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 32929590-32939589 Solanum lycopersicum
Solyc11g044340.1 10.0kb downstream 10.0kb downstream 20319 true SL2.50ch11: 32939590-32959908 Solanum lycopersicum
Solyc11g044340.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 32949909-32959908 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467786 5263 Asterids View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain