Gene : Phvul.001G178600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR30603:SF9 - RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC Genomic Order:  1765
Name:  ? Phvul.001G178600 Secondary Identifier:  ? PAC:37170662
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G178600 0.5kb upstream 0.5kb upstream 6187 true Chr01: 43582349-43588535 Phaseolus vulgaris
Phvul.001G178600 0.5kb upstream 0.5kb upstream 500 false Chr01: 43582349-43582848 Phaseolus vulgaris
Phvul.001G178600 0.5kb downstream 0.5kb downstream 6187 true Chr01: 43582849-43589035 Phaseolus vulgaris
Phvul.001G178600 0.5kb downstream 0.5kb downstream 500 false Chr01: 43588536-43589035 Phaseolus vulgaris
Phvul.001G178600 1.0kb upstream 1.0kb upstream 6687 true Chr01: 43581849-43588535 Phaseolus vulgaris
Phvul.001G178600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 43581849-43582848 Phaseolus vulgaris
Phvul.001G178600 1.0kb downstream 1.0kb downstream 6687 true Chr01: 43582849-43589535 Phaseolus vulgaris
Phvul.001G178600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 43588536-43589535 Phaseolus vulgaris
Phvul.001G178600 2.0kb upstream 2.0kb upstream 7687 true Chr01: 43580849-43588535 Phaseolus vulgaris
Phvul.001G178600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 43580849-43582848 Phaseolus vulgaris
Phvul.001G178600 2.0kb downstream 2.0kb downstream 7687 true Chr01: 43582849-43590535 Phaseolus vulgaris
Phvul.001G178600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 43588536-43590535 Phaseolus vulgaris
Phvul.001G178600 5.0kb upstream 5.0kb upstream 10687 true Chr01: 43577849-43588535 Phaseolus vulgaris
Phvul.001G178600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 43577849-43582848 Phaseolus vulgaris
Phvul.001G178600 5.0kb downstream 5.0kb downstream 10687 true Chr01: 43582849-43593535 Phaseolus vulgaris
Phvul.001G178600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 43588536-43593535 Phaseolus vulgaris
Phvul.001G178600 10.0kb upstream 10.0kb upstream 15687 true Chr01: 43572849-43588535 Phaseolus vulgaris
Phvul.001G178600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 43572849-43582848 Phaseolus vulgaris
Phvul.001G178600 10.0kb downstream 10.0kb downstream 15687 true Chr01: 43582849-43598535 Phaseolus vulgaris
Phvul.001G178600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 43588536-43598535 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311038 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.46882 0.0 17.616    
cufflinks 3.76192 0.0 12.8046    
cufflinks 18.4939 0.0 58.3442   High
cufflinks 2.49893 0.0 7.84158    
cufflinks 3.22615 0.0 13.958    
cufflinks 10.165 0.0 33.8047   High
cufflinks 3.12153 0.0 11.135    
cufflinks 2.9544 0.0 18.6199    
cufflinks 2.32415 0.0 12.1349    
cufflinks 4.83121 0.0 18.3653    
cufflinks 3.22705 0.0 13.6015    

0 Strain