Gene : Phvul.001G218400 P. vulgaris v2.1
Defline:  (1 of 32) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  2167
Name:  ? Phvul.001G218400 Secondary Identifier:  ? PAC:37168905
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G218400 0.5kb upstream 0.5kb upstream 4342 true Chr01: 47398001-47402342 Phaseolus vulgaris
Phvul.001G218400 0.5kb upstream 0.5kb upstream 500 false Chr01: 47398001-47398500 Phaseolus vulgaris
Phvul.001G218400 0.5kb downstream 0.5kb downstream 4342 true Chr01: 47398501-47402842 Phaseolus vulgaris
Phvul.001G218400 0.5kb downstream 0.5kb downstream 500 false Chr01: 47402343-47402842 Phaseolus vulgaris
Phvul.001G218400 1.0kb upstream 1.0kb upstream 4842 true Chr01: 47397501-47402342 Phaseolus vulgaris
Phvul.001G218400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47397501-47398500 Phaseolus vulgaris
Phvul.001G218400 1.0kb downstream 1.0kb downstream 4842 true Chr01: 47398501-47403342 Phaseolus vulgaris
Phvul.001G218400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47402343-47403342 Phaseolus vulgaris
Phvul.001G218400 2.0kb upstream 2.0kb upstream 5842 true Chr01: 47396501-47402342 Phaseolus vulgaris
Phvul.001G218400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47396501-47398500 Phaseolus vulgaris
Phvul.001G218400 2.0kb downstream 2.0kb downstream 5842 true Chr01: 47398501-47404342 Phaseolus vulgaris
Phvul.001G218400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47402343-47404342 Phaseolus vulgaris
Phvul.001G218400 5.0kb upstream 5.0kb upstream 8842 true Chr01: 47393501-47402342 Phaseolus vulgaris
Phvul.001G218400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47393501-47398500 Phaseolus vulgaris
Phvul.001G218400 5.0kb downstream 5.0kb downstream 8842 true Chr01: 47398501-47407342 Phaseolus vulgaris
Phvul.001G218400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47402343-47407342 Phaseolus vulgaris
Phvul.001G218400 10.0kb upstream 10.0kb upstream 13842 true Chr01: 47388501-47402342 Phaseolus vulgaris
Phvul.001G218400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47388501-47398500 Phaseolus vulgaris
Phvul.001G218400 10.0kb downstream 10.0kb downstream 13842 true Chr01: 47398501-47412342 Phaseolus vulgaris
Phvul.001G218400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47402343-47412342 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310214 5265 Fabidae View MSA
124067536 5270 Rosid View MSA
123744386 5271 Pentapetalae View MSA
122790869 5272 Eudicot View MSA
122045160 5273 Angiosperm View MSA
121348435 5274 Embryophyte View MSA
123380865 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.77889 0.0 9.46171   Low
cufflinks 6.04447 0.0 22.8359    
cufflinks 8.70859 0.0 28.4775   High
cufflinks 4.21909 0.0 17.0975    
cufflinks 5.49802 0.0 20.402    
cufflinks 7.13099 0.0 24.3435    
cufflinks 5.04314 0.0 19.6159    
cufflinks 4.1861 0.0 16.3541    
cufflinks 3.23712 0.0 14.3862    
cufflinks 1.09992 0.0 5.44126   Low
cufflinks 5.14614 0.0 19.6884    

0 Strain