Gene : Phvul.009G023700 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  235
Name:  ? Phvul.009G023700 Secondary Identifier:  ? PAC:37150653
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G023700 0.5kb upstream 0.5kb upstream 1604 true Chr09: 5715977-5717580 Phaseolus vulgaris
Phvul.009G023700 0.5kb upstream 0.5kb upstream 500 false Chr09: 5717081-5717580 Phaseolus vulgaris
Phvul.009G023700 0.5kb downstream 0.5kb downstream 1604 true Chr09: 5715477-5717080 Phaseolus vulgaris
Phvul.009G023700 0.5kb downstream 0.5kb downstream 500 false Chr09: 5715477-5715976 Phaseolus vulgaris
Phvul.009G023700 1.0kb upstream 1.0kb upstream 2104 true Chr09: 5715977-5718080 Phaseolus vulgaris
Phvul.009G023700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 5717081-5718080 Phaseolus vulgaris
Phvul.009G023700 1.0kb downstream 1.0kb downstream 2104 true Chr09: 5714977-5717080 Phaseolus vulgaris
Phvul.009G023700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 5714977-5715976 Phaseolus vulgaris
Phvul.009G023700 2.0kb upstream 2.0kb upstream 3104 true Chr09: 5715977-5719080 Phaseolus vulgaris
Phvul.009G023700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 5717081-5719080 Phaseolus vulgaris
Phvul.009G023700 2.0kb downstream 2.0kb downstream 3104 true Chr09: 5713977-5717080 Phaseolus vulgaris
Phvul.009G023700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 5713977-5715976 Phaseolus vulgaris
Phvul.009G023700 5.0kb upstream 5.0kb upstream 6104 true Chr09: 5715977-5722080 Phaseolus vulgaris
Phvul.009G023700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 5717081-5722080 Phaseolus vulgaris
Phvul.009G023700 5.0kb downstream 5.0kb downstream 6104 true Chr09: 5710977-5717080 Phaseolus vulgaris
Phvul.009G023700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 5710977-5715976 Phaseolus vulgaris
Phvul.009G023700 10.0kb upstream 10.0kb upstream 11104 true Chr09: 5715977-5727080 Phaseolus vulgaris
Phvul.009G023700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 5717081-5727080 Phaseolus vulgaris
Phvul.009G023700 10.0kb downstream 10.0kb downstream 11104 true Chr09: 5705977-5717080 Phaseolus vulgaris
Phvul.009G023700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 5705977-5715976 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313595 5265 Fabidae View MSA
124065859 5270 Rosid View MSA
123753688 5271 Pentapetalae View MSA
122793597 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 403.255 0.0 1319.78 High  
cufflinks 464.685 0.0 1555.48 High  
cufflinks 1183.92 0.0 4800.95 High High
cufflinks 777.075 0.0 2889.07 High  
cufflinks 851.851 0.0 3278.24 High  
cufflinks 255.702 0.0 766.691 High Low
cufflinks 435.284 0.0 1459.37 High  
cufflinks 297.824 0.0 920.471 High Low
cufflinks 518.49 0.0 1798.48 High  
cufflinks 990.244 0.0 3992.47 High High
cufflinks 561.702 0.0 1987.22 High  

0 Strain