Gene : Phvul.008G016100 P. vulgaris v2.1
Defline:  (1 of 2) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) Genomic Order:  162
Name:  ? Phvul.008G016100 Secondary Identifier:  ? PAC:37160631
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G016100 0.5kb upstream 0.5kb upstream 2997 true Chr08: 1321512-1324508 Phaseolus vulgaris
Phvul.008G016100 0.5kb upstream 0.5kb upstream 500 false Chr08: 1321512-1322011 Phaseolus vulgaris
Phvul.008G016100 0.5kb downstream 0.5kb downstream 2997 true Chr08: 1322012-1325008 Phaseolus vulgaris
Phvul.008G016100 0.5kb downstream 0.5kb downstream 500 false Chr08: 1324509-1325008 Phaseolus vulgaris
Phvul.008G016100 1.0kb upstream 1.0kb upstream 3497 true Chr08: 1321012-1324508 Phaseolus vulgaris
Phvul.008G016100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1321012-1322011 Phaseolus vulgaris
Phvul.008G016100 1.0kb downstream 1.0kb downstream 3497 true Chr08: 1322012-1325508 Phaseolus vulgaris
Phvul.008G016100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1324509-1325508 Phaseolus vulgaris
Phvul.008G016100 2.0kb upstream 2.0kb upstream 4497 true Chr08: 1320012-1324508 Phaseolus vulgaris
Phvul.008G016100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1320012-1322011 Phaseolus vulgaris
Phvul.008G016100 2.0kb downstream 2.0kb downstream 4497 true Chr08: 1322012-1326508 Phaseolus vulgaris
Phvul.008G016100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1324509-1326508 Phaseolus vulgaris
Phvul.008G016100 5.0kb upstream 5.0kb upstream 7497 true Chr08: 1317012-1324508 Phaseolus vulgaris
Phvul.008G016100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1317012-1322011 Phaseolus vulgaris
Phvul.008G016100 5.0kb downstream 5.0kb downstream 7497 true Chr08: 1322012-1329508 Phaseolus vulgaris
Phvul.008G016100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1324509-1329508 Phaseolus vulgaris
Phvul.008G016100 10.0kb upstream 10.0kb upstream 12497 true Chr08: 1312012-1324508 Phaseolus vulgaris
Phvul.008G016100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1312012-1322011 Phaseolus vulgaris
Phvul.008G016100 10.0kb downstream 10.0kb downstream 12497 true Chr08: 1322012-1334508 Phaseolus vulgaris
Phvul.008G016100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1324509-1334508 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314520 5265 Fabidae View MSA
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.0546 0.0 155.243 High  
cufflinks 68.5906 0.0 177.373 High High
cufflinks 25.1705 0.0 67.5858   Low
cufflinks 84.3407 0.0 218.705 High High
cufflinks 56.536 0.0 146.226 High  
cufflinks 32.2526 0.0 85.0631    
cufflinks 35.0073 0.0 91.7785 High  
cufflinks 38.9078 0.0 101.498 High  
cufflinks 51.5072 0.0 133.349 High  
cufflinks 33.6111 0.0 88.3239    
cufflinks 56.7856 0.0 146.839 High  

0 Strain