Gene : Thecc1EG003025 T. cacao v1.1
Defline:  (1 of 2) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) Genomic Order:  2246
Name:  ? Thecc1EG003025 Secondary Identifier:  ? PAC:27437519
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003025 0.5kb upstream 0.5kb upstream 12271 true scaffold_1: 18225816-18238086 Theobroma cacao
Thecc1EG003025 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18237587-18238086 Theobroma cacao
Thecc1EG003025 0.5kb downstream 0.5kb downstream 12271 true scaffold_1: 18225316-18237586 Theobroma cacao
Thecc1EG003025 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18225316-18225815 Theobroma cacao
Thecc1EG003025 1.0kb upstream 1.0kb upstream 12771 true scaffold_1: 18225816-18238586 Theobroma cacao
Thecc1EG003025 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18237587-18238586 Theobroma cacao
Thecc1EG003025 1.0kb downstream 1.0kb downstream 12771 true scaffold_1: 18224816-18237586 Theobroma cacao
Thecc1EG003025 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18224816-18225815 Theobroma cacao
Thecc1EG003025 2.0kb upstream 2.0kb upstream 13771 true scaffold_1: 18225816-18239586 Theobroma cacao
Thecc1EG003025 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18237587-18239586 Theobroma cacao
Thecc1EG003025 2.0kb downstream 2.0kb downstream 13771 true scaffold_1: 18223816-18237586 Theobroma cacao
Thecc1EG003025 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18223816-18225815 Theobroma cacao
Thecc1EG003025 5.0kb upstream 5.0kb upstream 16771 true scaffold_1: 18225816-18242586 Theobroma cacao
Thecc1EG003025 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18237587-18242586 Theobroma cacao
Thecc1EG003025 5.0kb downstream 5.0kb downstream 16771 true scaffold_1: 18220816-18237586 Theobroma cacao
Thecc1EG003025 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18220816-18225815 Theobroma cacao
Thecc1EG003025 10.0kb upstream 10.0kb upstream 21771 true scaffold_1: 18225816-18247586 Theobroma cacao
Thecc1EG003025 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18237587-18247586 Theobroma cacao
Thecc1EG003025 10.0kb downstream 10.0kb downstream 21771 true scaffold_1: 18215816-18237586 Theobroma cacao
Thecc1EG003025 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18215816-18225815 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain