Gene : Thecc1EG003838 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2450
Name:  ? Thecc1EG003838 Secondary Identifier:  ? PAC:27435963
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003838 0.5kb upstream 0.5kb upstream 2065 true scaffold_1: 27085079-27087143 Theobroma cacao
Thecc1EG003838 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27086644-27087143 Theobroma cacao
Thecc1EG003838 0.5kb downstream 0.5kb downstream 2065 true scaffold_1: 27084579-27086643 Theobroma cacao
Thecc1EG003838 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27084579-27085078 Theobroma cacao
Thecc1EG003838 1.0kb upstream 1.0kb upstream 2565 true scaffold_1: 27085079-27087643 Theobroma cacao
Thecc1EG003838 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27086644-27087643 Theobroma cacao
Thecc1EG003838 1.0kb downstream 1.0kb downstream 2565 true scaffold_1: 27084079-27086643 Theobroma cacao
Thecc1EG003838 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27084079-27085078 Theobroma cacao
Thecc1EG003838 2.0kb upstream 2.0kb upstream 3565 true scaffold_1: 27085079-27088643 Theobroma cacao
Thecc1EG003838 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27086644-27088643 Theobroma cacao
Thecc1EG003838 2.0kb downstream 2.0kb downstream 3565 true scaffold_1: 27083079-27086643 Theobroma cacao
Thecc1EG003838 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27083079-27085078 Theobroma cacao
Thecc1EG003838 5.0kb upstream 5.0kb upstream 6565 true scaffold_1: 27085079-27091643 Theobroma cacao
Thecc1EG003838 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27086644-27091643 Theobroma cacao
Thecc1EG003838 5.0kb downstream 5.0kb downstream 6565 true scaffold_1: 27080079-27086643 Theobroma cacao
Thecc1EG003838 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27080079-27085078 Theobroma cacao
Thecc1EG003838 10.0kb upstream 10.0kb upstream 11565 true scaffold_1: 27085079-27096643 Theobroma cacao
Thecc1EG003838 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27086644-27096643 Theobroma cacao
Thecc1EG003838 10.0kb downstream 10.0kb downstream 11565 true scaffold_1: 27075079-27086643 Theobroma cacao
Thecc1EG003838 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27075079-27085078 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain