Gene : Thecc1EG003791 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2436
Name:  ? Thecc1EG003791 Secondary Identifier:  ? PAC:27434346
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003791 0.5kb upstream 0.5kb upstream 5961 true scaffold_1: 26674900-26680860 Theobroma cacao
Thecc1EG003791 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 26680361-26680860 Theobroma cacao
Thecc1EG003791 0.5kb downstream 0.5kb downstream 5961 true scaffold_1: 26674400-26680360 Theobroma cacao
Thecc1EG003791 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 26674400-26674899 Theobroma cacao
Thecc1EG003791 1.0kb upstream 1.0kb upstream 6461 true scaffold_1: 26674900-26681360 Theobroma cacao
Thecc1EG003791 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 26680361-26681360 Theobroma cacao
Thecc1EG003791 1.0kb downstream 1.0kb downstream 6461 true scaffold_1: 26673900-26680360 Theobroma cacao
Thecc1EG003791 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 26673900-26674899 Theobroma cacao
Thecc1EG003791 2.0kb upstream 2.0kb upstream 7461 true scaffold_1: 26674900-26682360 Theobroma cacao
Thecc1EG003791 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 26680361-26682360 Theobroma cacao
Thecc1EG003791 2.0kb downstream 2.0kb downstream 7461 true scaffold_1: 26672900-26680360 Theobroma cacao
Thecc1EG003791 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 26672900-26674899 Theobroma cacao
Thecc1EG003791 5.0kb upstream 5.0kb upstream 10461 true scaffold_1: 26674900-26685360 Theobroma cacao
Thecc1EG003791 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 26680361-26685360 Theobroma cacao
Thecc1EG003791 5.0kb downstream 5.0kb downstream 10461 true scaffold_1: 26669900-26680360 Theobroma cacao
Thecc1EG003791 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 26669900-26674899 Theobroma cacao
Thecc1EG003791 10.0kb upstream 10.0kb upstream 15461 true scaffold_1: 26674900-26690360 Theobroma cacao
Thecc1EG003791 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 26680361-26690360 Theobroma cacao
Thecc1EG003791 10.0kb downstream 10.0kb downstream 15461 true scaffold_1: 26664900-26680360 Theobroma cacao
Thecc1EG003791 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 26664900-26674899 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain