Gene : Thecc1EG003698 T. cacao v1.1
Defline:  (1 of 4) PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) Genomic Order:  2406
Name:  ? Thecc1EG003698 Secondary Identifier:  ? PAC:27432005
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003698 0.5kb upstream 0.5kb upstream 9423 true scaffold_1: 25729301-25738723 Theobroma cacao
Thecc1EG003698 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 25729301-25729800 Theobroma cacao
Thecc1EG003698 0.5kb downstream 0.5kb downstream 9423 true scaffold_1: 25729801-25739223 Theobroma cacao
Thecc1EG003698 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 25738724-25739223 Theobroma cacao
Thecc1EG003698 1.0kb upstream 1.0kb upstream 9923 true scaffold_1: 25728801-25738723 Theobroma cacao
Thecc1EG003698 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 25728801-25729800 Theobroma cacao
Thecc1EG003698 1.0kb downstream 1.0kb downstream 9923 true scaffold_1: 25729801-25739723 Theobroma cacao
Thecc1EG003698 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 25738724-25739723 Theobroma cacao
Thecc1EG003698 2.0kb upstream 2.0kb upstream 10923 true scaffold_1: 25727801-25738723 Theobroma cacao
Thecc1EG003698 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 25727801-25729800 Theobroma cacao
Thecc1EG003698 2.0kb downstream 2.0kb downstream 10923 true scaffold_1: 25729801-25740723 Theobroma cacao
Thecc1EG003698 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 25738724-25740723 Theobroma cacao
Thecc1EG003698 5.0kb upstream 5.0kb upstream 13923 true scaffold_1: 25724801-25738723 Theobroma cacao
Thecc1EG003698 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 25724801-25729800 Theobroma cacao
Thecc1EG003698 5.0kb downstream 5.0kb downstream 13923 true scaffold_1: 25729801-25743723 Theobroma cacao
Thecc1EG003698 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 25738724-25743723 Theobroma cacao
Thecc1EG003698 10.0kb upstream 10.0kb upstream 18923 true scaffold_1: 25719801-25738723 Theobroma cacao
Thecc1EG003698 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 25719801-25729800 Theobroma cacao
Thecc1EG003698 10.0kb downstream 10.0kb downstream 18923 true scaffold_1: 25729801-25748723 Theobroma cacao
Thecc1EG003698 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 25738724-25748723 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain